RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	ADD37	Q03233	198 aa		4.55	□□□□□ -1.68
UBP9	YER098W	CGI121	Q03705	181 aa	Known RBP	4.55	□□□□□ -1.68
UBP9	YER098W	REX4	Q08237	289 aa		4.55	□□□□□ -1.68
UBP9	YER098W	YPL257W	Q08974	193 aa		4.55	□□□□□ -1.68
UBP9	YER098W	FRE7	Q12333	620 aa		4.55	□□□□□ -1.68
UBP9	YER098W	ATG5	Q12380	294 aa		4.55	□□□□□ -1.68
UBP9	YER098W	TPI1	P00942	248 aa	Known RBP	4.55	□□□□□ -1.68
UBP9	YER098W	PBN1	P25580	416 aa		4.55	□□□□□ -1.68
UBP9	YER098W	MIG1	P27705	504 aa		4.55	□□□□□ -1.68
UBP9	YER098W	HMX1	P32339	317 aa		4.55	□□□□□ -1.68
UBP9	YER098W	YKL070W	P36087	169 aa		4.55	□□□□□ -1.68
UBP9	YER098W	BDH1	P39714	382 aa		4.55	□□□□□ -1.68
UBP9	YER098W	YER188W	P40103	239 aa		4.55	□□□□□ -1.68
UBP9	YER098W	BNS1	P50084	137 aa		4.55	□□□□□ -1.68
UBP9	YER098W	NSA1	P53136	463 aa	Predicted RBP	4.55	□□□□□ -1.68
UBP9	YER098W	PAU12	P53343	120 aa		4.55	□□□□□ -1.68
UBP9	YER098W	PGA1	P53896	198 aa		4.55	□□□□□ -1.68
UBP9	YER098W	BUD25	P85052	153 aa		4.55	□□□□□ -1.68
UBP9	YER098W	ATC1	Q04005	294 aa		4.55	□□□□□ -1.68
UBP9	YER098W	AVO2	Q04749	426 aa		4.55	□□□□□ -1.68
UBP9	YER098W	PER33	Q12144	273 aa		4.55	□□□□□ -1.68
UBP9	YER098W	TDH2	P00358	332 aa	Known RBP	4.54	□□□□□ -1.68
UBP9	YER098W	POP5	P28005	173 aa		4.54	□□□□□ -1.68
UBP9	YER098W	HOT13	P36078	116 aa		4.54	□□□□□ -1.68
UBP9	YER098W	YAL037W	P39728	267 aa		4.54	□□□□□ -1.68
UBP9	YER098W	SPG5	P42933	373 aa		4.54	□□□□□ -1.68
UBP9	YER098W	MPP6	P53725	186 aa	Predicted RBP	4.54	□□□□□ -1.68
UBP9	YER098W	VPS28	Q02767	242 aa		4.54	□□□□□ -1.68
UBP9	YER098W	RSM10	Q03201	203 aa		4.54	□□□□□ -1.68
UBP9	YER098W	NUP53	Q03790	475 aa		4.54	□□□□□ -1.68
UBP9	YER098W	YMR315W	Q04869	349 aa	Known RBP	4.54	□□□□□ -1.68
UBP9	YER098W	HEM25	Q07534	307 aa		4.54	□□□□□ -1.68
UBP9	YER098W	GEP3	Q08622	556 aa		4.54	□□□□□ -1.68
UBP9	YER098W	RPL12A	P0CX53	165 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	RPL12B	P0CX54	165 aa		4.53	□□□□□ -1.68
UBP9	YER098W	PHD1	P36093	366 aa		4.53	□□□□□ -1.68
UBP9	YER098W	RPS20	P38701	121 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	GWT1	P47026	490 aa		4.53	□□□□□ -1.68
UBP9	YER098W	CCC1	P47818	322 aa		4.53	□□□□□ -1.68
UBP9	YER098W	ATP23	P53722	227 aa		4.53	□□□□□ -1.68
UBP9	YER098W	YNL140C	P53910	189 aa		4.53	□□□□□ -1.68
UBP9	YER098W	LDB18	Q07887	179 aa		4.53	□□□□□ -1.68
UBP9	YER098W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
UBP9	YER098W	AIM45	Q12480	344 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	YLR146W-A	Q2V2P1	62 aa		4.53	□□□□□ -1.68
UBP9	YER098W	COX19	Q3E731	98 aa		4.53	□□□□□ -1.68
UBP9	YER098W	YCL012C	Q8J0M4	134 aa		4.53	□□□□□ -1.68
UBP9	YER098W	SLM5	P25345	492 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	PEX4	P29340	183 aa		4.53	□□□□□ -1.68
UBP9	YER098W	ERG24	P32462	438 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	PAU2	P32612	120 aa		4.53	□□□□□ -1.68
UBP9	YER098W	PRP39	P39682	629 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	HMF1	P40037	129 aa	Known RBP	4.53	□□□□□ -1.68
UBP9	YER098W	YGL101W	P53144	215 aa		4.53	□□□□□ -1.68
UBP9	YER098W	APJ1	P53940	528 aa		4.53	□□□□□ -1.68
UBP9	YER098W	SAM50	P53969	484 aa		4.53	□□□□□ -1.68
UBP9	YER098W	YDC1	Q02896	317 aa		4.53	□□□□□ -1.68
UBP9	YER098W	CCE1	Q03702	353 aa		4.53	□□□□□ -1.68
UBP9	YER098W	UPS3	Q04006	179 aa		4.53	□□□□□ -1.68
UBP9	YER098W	RRG8	Q06109	277 aa		4.53	□□□□□ -1.68
UBP9	YER098W	GDH1	P07262	454 aa	Known RBP	4.52	□□□□□ -1.69
UBP9	YER098W	YCR007C	P25354	239 aa		4.52	□□□□□ -1.69
UBP9	YER098W	GLC7	P32598	312 aa	Known RBP	4.52	□□□□□ -1.69
UBP9	YER098W	HMT1	P38074	348 aa		4.52	□□□□□ -1.69
UBP9	YER098W	VPS52	P39904	641 aa		4.52	□□□□□ -1.69
UBP9	YER098W	GAT1	P43574	510 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YNL234W	P53857	426 aa		4.52	□□□□□ -1.69
UBP9	YER098W	BNA5	Q05979	453 aa		4.52	□□□□□ -1.69
UBP9	YER098W	IRC10	Q08118	586 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YOR015W	Q12169	119 aa		4.52	□□□□□ -1.69
UBP9	YER098W	CCH1	P50077	2039 aa		4.52	□□□□□ -1.69
UBP9	YER098W	COX5B	P00425	151 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YPS1	P32329	569 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YKL097C	P34245	136 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YKL075C	P36083	450 aa		4.52	□□□□□ -1.69
UBP9	YER098W	LDB7	P38210	180 aa		4.52	□□□□□ -1.69
UBP9	YER098W	ARC40	P38328	384 aa	Known RBP	4.52	□□□□□ -1.69
UBP9	YER098W	GIM4	P40005	111 aa	Known RBP	4.52	□□□□□ -1.69
UBP9	YER098W	ICE2	P40499	491 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YIR016W	P40572	265 aa		4.52	□□□□□ -1.69
UBP9	YER098W	MGA1	P53050	456 aa		4.52	□□□□□ -1.69
UBP9	YER098W	ACT1	P60010	375 aa	Known RBP	4.52	□□□□□ -1.69
UBP9	YER098W	YLR112W	Q12130	139 aa		4.52	□□□□□ -1.69
UBP9	YER098W	PST1	Q12355	444 aa		4.52	□□□□□ -1.69
UBP9	YER098W	YOP1	Q12402	180 aa		4.52	□□□□□ -1.69
UBP9	YER098W	DDI2	P0CH63	225 aa		4.51	□□□□□ -1.69
UBP9	YER098W	DDI3	P0CH64	225 aa		4.51	□□□□□ -1.69
UBP9	YER098W	CWP1	P28319	239 aa		4.51	□□□□□ -1.69
UBP9	YER098W	MKK1	P32490	508 aa		4.51	□□□□□ -1.69
UBP9	YER098W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	not detected
UBP9	YER098W	UPS2	P35200	230 aa		4.51	□□□□□ -1.69
UBP9	YER098W	NSA2	P40078	261 aa	Known RBP	4.51	□□□□□ -1.69
UBP9	YER098W	MMF1	P40185	145 aa	Known RBP	4.51	□□□□□ -1.69
UBP9	YER098W	OTU1	P43558	301 aa		4.51	□□□□□ -1.69
UBP9	YER098W	TMA23	Q03525	211 aa		4.51	□□□□□ -1.69
UBP9	YER098W	CTR3	Q06686	241 aa		4.51	□□□□□ -1.69
UBP9	YER098W	HRD1	Q08109	551 aa		4.51	□□□□□ -1.69
UBP9	YER098W	YPR011C	Q12251	326 aa		4.51	□□□□□ -1.69
UBP9	YER098W	YCR100C	P25606	316 aa		4.51	□□□□□ -1.69
UBP9	YER098W	CSE2	P33308	149 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms