RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	SNO3	P43544	222 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	OST2	P46964	130 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	SNO2	P53823	222 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	YNL165W	P53891	406 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	RSM10	Q03201	203 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	SDC1	Q03323	175 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	UTP15	Q04305	513 aa	Known RBP	5.16	□□□□□ -1.58
SUB2	YDL084W	GPI11	Q06636	219 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	ENV7	Q12003	364 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	RLM1	Q12224	676 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	ZPS1	Q12512	249 aa		5.16	□□□□□ -1.58
SUB2	YDL084W	SEC7	P11075	2009 aa	Known RBP	5.15	□□□□□ -1.59
SUB2	YDL084W	DNF2	Q12675	1612 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	PAI3	P01094	68 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	RAD52	P06778	471 aa	Known RBP	5.15	□□□□□ -1.59
SUB2	YDL084W	UBC5	P15732	148 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	SLM5	P25345	492 aa	Known RBP	5.15	□□□□□ -1.59
SUB2	YDL084W	YCR007C	P25354	239 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	POP5	P28005	173 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	MDM31	P38880	579 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	APQ12	P40532	138 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	YFR020W	P43600	232 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	RPS10B	P46784	105 aa	Known RBP	5.15	□□□□□ -1.59
SUB2	YDL084W	LCB3	P47013	409 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	TAD2	P47058	250 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	HNT2	P49775	206 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	NMA2	P53204	395 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	YGR039W	P53225	103 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	BIO4	P53630	237 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	YNR048W	P53740	393 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	YLR224W	Q05947	369 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	TEN1	Q07921	160 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	YOL024W	Q08172	172 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	ICT1	Q12385	394 aa		5.15	□□□□□ -1.59
SUB2	YDL084W	MSW1	P04803	379 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	SEC4	P07560	215 aa	Known RBP	5.14	□□□□□ -1.59
SUB2	YDL084W	MLF3	P32047	452 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	YSC83	P32792	385 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	MRPL28	P36527	147 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	PEX7	P39108	375 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	YEA4	P40004	342 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	BUD13	P46947	266 aa	Predicted RBP	5.14	□□□□□ -1.59
SUB2	YDL084W	GCV1	P48015	400 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	COQ5	P49017	307 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	APJ1	P53940	528 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	KTR5	P53966	522 aa	Predicted RBP	5.14	□□□□□ -1.59
SUB2	YDL084W	HSK3	P69852	69 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	RCE1	Q03530	315 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	NUP53	Q03790	475 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	SCW10	Q04951	389 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	UPS1	Q05776	175 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	THP1	Q08231	455 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	MMT2	Q08970	484 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	YLR412C-A	Q3E742	68 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	BOL1	Q3E793	110 aa		5.14	□□□□□ -1.59
SUB2	YDL084W	YRF1-3	P0CX14	1859 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	YRF1-7	P0CX15	1859 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	YRF1-6	P53819	1859 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	PEP4	P07267	405 aa	Known RBP	5.13	□□□□□ -1.59
SUB2	YDL084W	TIP1	P27654	210 aa	Predicted RBP	5.13	□□□□□ -1.59
SUB2	YDL084W	PRE2	P30656	287 aa	Known RBP	5.13	□□□□□ -1.59
SUB2	YDL084W	CAT5	P41735	233 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	GON7	P46984	123 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	FMP41	P53889	259 aa	Known RBP	5.13	□□□□□ -1.59
SUB2	YDL084W	AAH1	P53909	347 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	YLR152C	P54072	576 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	NAT3	Q06504	195 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	SNX3	Q08826	162 aa	Known RBP	5.13	□□□□□ -1.59
SUB2	YDL084W	MCT1	Q12283	360 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	CDC25	P04821	1589 aa		5.13	□□□□□ -1.59
SUB2	YDL084W	FMP49	A0A023PZB3	126 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YEL009C-A	A0A023PZF2	135 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	DIF1	O13577	133 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YLR415C	O13578	112 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	SIR2	P06700	562 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	RPL12A	P0CX53	165 aa	Known RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	RPL12B	P0CX54	165 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	SAM35	P14693	329 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YCR100C	P25606	316 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	TOA2	P32774	122 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	SWD2	P36104	329 aa	Predicted RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	ATG8	P38182	117 aa	RIP-Chip data	5.12	□□□□□ -1.59	not detected
SUB2	YDL084W	MOH1	P38191	138 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	ECM33	P38248	429 aa	Known RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	ECM14	P38836	430 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	MET30	P39014	640 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YIL059C	P40520	121 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	TAX4	P47030	604 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	OST3	P48439	350 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	SYF2	P53277	215 aa	Predicted RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	SAY1	P53324	424 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	CUZ1	P53899	274 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	MSS11	Q03825	758 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	RPC11	Q04307	110 aa	Predicted RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	SNT309	Q06091	175 aa	Predicted RBP	5.12	□□□□□ -1.59
SUB2	YDL084W	LOA1	Q06508	300 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YPQ1	Q12010	308 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YDL007C-A	Q2V2Q0	85 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YNL277W-A	Q3E7Z0	62 aa		5.12	□□□□□ -1.59
SUB2	YDL084W	YIL134C-A	Q45U18	67 aa		5.12	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms