RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	BBP1	Q12365	385 aa		11.85	□□□□□ -0.51
DEP1	YAL013W	OLE1	P21147	510 aa	Known RBP	11.84	□□□□□ -0.51
DEP1	YAL013W	MAG1	P22134	296 aa	Known RBP	11.84	□□□□□ -0.51
DEP1	YAL013W	YKL187C	P34231	750 aa		11.84	□□□□□ -0.51
DEP1	YAL013W	YJR111C	P47148	283 aa	Known RBP	11.84	□□□□□ -0.51
DEP1	YAL013W	HSK3	P69852	69 aa		11.84	□□□□□ -0.51
DEP1	YAL013W	MEH1	Q02205	184 aa		11.84	□□□□□ -0.51
DEP1	YAL013W	CAC2	Q04199	468 aa		11.84	□□□□□ -0.51
DEP1	YAL013W	NOC4	Q06512	552 aa	Predicted RBP	11.84	□□□□□ -0.51
DEP1	YAL013W	RPL43A	P0CX25	92 aa	Known RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	RPL43B	P0CX26	92 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	CPR5	P35176	225 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	OSH7	P38755	437 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	RPL13B	P40212	199 aa	Known RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	SLM1	P40485	686 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	GLR1	P41921	483 aa	Known RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	XPT1	P47165	209 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	JAC1	P53193	184 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	TEX1	P53851	422 aa	Known RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	TSA2	Q04120	196 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	DPB4	Q04603	196 aa	Known RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	RIM9	Q04734	239 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	AEP3	Q12089	606 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	DGK1	Q12382	290 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	RPL13A	Q12690	199 aa	Predicted RBP	11.83	□□□□□ -0.52
DEP1	YAL013W	YJR112W-A	Q3E743	109 aa		11.83	□□□□□ -0.52
DEP1	YAL013W	EMP24	P32803	203 aa	Known RBP	11.82	□□□□□ -0.52
DEP1	YAL013W	VPS28	Q02767	242 aa		11.82	□□□□□ -0.52
DEP1	YAL013W	PML1	Q07930	204 aa	Predicted RBP	11.82	□□□□□ -0.52
DEP1	YAL013W	PDC2	P32896	925 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	VMA7	P39111	118 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	YHC3	P47040	408 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	PNC1	P53184	216 aa	Known RBP	11.81	□□□□□ -0.52
DEP1	YAL013W	ACT1	P60010	375 aa	Known RBP	11.81	□□□□□ -0.52
DEP1	YAL013W	GMC1	Q04399	608 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	RRT7	Q07829	113 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	YOL029C	Q08187	201 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	YMR105W-A	Q8TGS8	64 aa		11.81	□□□□□ -0.52
DEP1	YAL013W	SNA4	Q07549	140 aa		11.8	□□□□□ -0.52
DEP1	YAL013W	SWT1	Q12104	458 aa		11.8	□□□□□ -0.52
DEP1	YAL013W	RFM1	Q12192	310 aa		11.8	□□□□□ -0.52
DEP1	YAL013W	YOR029W	Q12243	111 aa		11.8	□□□□□ -0.52
DEP1	YAL013W	GAR1	P28007	205 aa	Known RBP	11.79	□□□□□ -0.52
DEP1	YAL013W	ERV15	P38312	142 aa		11.79	□□□□□ -0.52
DEP1	YAL013W	GAT2	P40209	560 aa		11.79	□□□□□ -0.52
DEP1	YAL013W	QRI1	P43123	477 aa	Known RBP	11.79	□□□□□ -0.52
DEP1	YAL013W	BNA2	P47125	453 aa		11.79	□□□□□ -0.52
DEP1	YAL013W	EST3	Q03096	181 aa		11.79	□□□□□ -0.52
DEP1	YAL013W	ATG31	Q12421	196 aa		11.79	□□□□□ -0.52
DEP1	YAL013W	SPC29	P33419	253 aa		11.78	□□□□□ -0.52
DEP1	YAL013W	YJR012C	P47087	207 aa		11.78	□□□□□ -0.52
DEP1	YAL013W	YIF1	P53845	314 aa	Known RBP	11.78	□□□□□ -0.52
DEP1	YAL013W	GPI15	P53961	229 aa		11.78	□□□□□ -0.52
DEP1	YAL013W	REC104	P33323	182 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	SRY1	P36007	326 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	CTR2	P38865	189 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	IKI1	P38874	309 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	11.77	□□□□□ -0.53	not detected
DEP1	YAL013W	PIR5	P46999	287 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	RPL21A	Q02753	160 aa	Known RBP	11.77	□□□□□ -0.53
DEP1	YAL013W	HED1	Q03937	162 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	ECM18	Q04623	453 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	PRP11	Q07350	266 aa	Predicted RBP	11.77	□□□□□ -0.53
DEP1	YAL013W	WSC3	Q12215	556 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	RPL21B	Q12672	160 aa	Known RBP	11.77	□□□□□ -0.53
DEP1	YAL013W	YLR146W-A	Q2V2P1	62 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	BOL1	Q3E793	110 aa		11.77	□□□□□ -0.53
DEP1	YAL013W	MRS4	P23500	304 aa		11.76	□□□□□ -0.53
DEP1	YAL013W	ASP1	P38986	381 aa	Predicted RBP	11.76	□□□□□ -0.53
DEP1	YAL013W	GCV3	P39726	170 aa	Predicted RBP	11.76	□□□□□ -0.53
DEP1	YAL013W	YEA6	P39953	335 aa		11.76	□□□□□ -0.53
DEP1	YAL013W	YER121W	P40076	114 aa		11.76	□□□□□ -0.53
DEP1	YAL013W	YGL117W	P53133	265 aa		11.76	□□□□□ -0.53
DEP1	YAL013W	GEP7	P53171	287 aa		11.76	□□□□□ -0.53
DEP1	YAL013W	ERP1	Q05359	219 aa	Known RBP	11.76	□□□□□ -0.53
DEP1	YAL013W	DBP2	P24783	546 aa	Known RBP	11.75	□□□□□ -0.53
DEP1	YAL013W	COQ2	P32378	372 aa		11.75	□□□□□ -0.53
DEP1	YAL013W	RPD3	P32561	433 aa		11.75	□□□□□ -0.53
DEP1	YAL013W	ISC10	P32645	267 aa		11.75	□□□□□ -0.53
DEP1	YAL013W	UBC12	P52491	188 aa		11.75	□□□□□ -0.53
DEP1	YAL013W	BPH1	P25356	2167 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	YBR085C-A	O43137	85 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	SPS18	P32572	300 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	SSO2	P39926	295 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	AGX1	P43567	385 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	SBH2	P52871	88 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	YGL262W	P53054	175 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	MSO1	P53604	210 aa	Known RBP	11.74	□□□□□ -0.53
DEP1	YAL013W	CWC25	P53854	179 aa	Known RBP	11.74	□□□□□ -0.53
DEP1	YAL013W	DID2	P69771	204 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	BER1	Q06688	274 aa	Known RBP	11.74	□□□□□ -0.53
DEP1	YAL013W	PAM18	Q07914	168 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	HRD1	Q08109	551 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	YBL029C-A	Q3E756	94 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	YBR255C-A	Q3E776	120 aa		11.74	□□□□□ -0.53
DEP1	YAL013W	APA2	P22108	325 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	ROX3	P25046	220 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	LSB5	P25369	354 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	PCL7	P40186	285 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	TTI2	P47168	421 aa		11.73	□□□□□ -0.53

Retrieved 100 of 5,963 RNA–protein pairs in 63 ms