RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LIN9Q5TKA1 542 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 SPATA1Q5VX52 437 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 RSPO2Q6UXX9 243 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-206ENST00000579558 CEP57L1Q8IYX8 460 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 TDRD5Q8NAT2 981 aaKnown RBP25.94■■□□□ 1.74
SHMT1-206ENST00000579558 BLZF1Q9H2G9 400 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 ASB7Q9H672 318 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 DERAQ9Y315 318 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 ZMYND10O75800 440 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 GARTP22102 1010 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 CASP1P29466 404 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 AFMP43652 599 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 POU5F1Q01860 360 aaKnown RBP25.93■■□□□ 1.74
SHMT1-206ENST00000579558 CRELD2Q6UXH1 353 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-206ENST00000579558 GLIS3Q8NEA6 775 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 ZNF707Q96C28 371 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-206ENST00000579558 SAAL1Q96ER3 474 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 FAM213AQ9BRX8 229 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 RHOBTB2Q9BYZ6 727 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 PIDD1Q9HB75 910 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 C11orf16Q9NQ32 467 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 SERTAD1Q9UHV2 236 aa25.93■■□□□ 1.74
SHMT1-206ENST00000579558 H7C4K7 107 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 GPR37L1O60883 481 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 PFKFB1P16118 471 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 CMA1P23946 247 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 FAM26FQ5R3K3 315 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 UNC13DQ70J99 1090 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 APPL2Q8NEU8 664 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 PRKD2Q9BZL6 878 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 PCDHB8Q9UN66 801 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 USTQ9Y2C2 406 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 C2CD2Q9Y426 696 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 TCHHQ07283 1943 aa25.92■■□□□ 1.74
SHMT1-206ENST00000579558 A0A1B0GVL5 298 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 IL18RAPO95256 599 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 PAPLNO95428 1278 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 LDHAP00338 332 aaKnown RBP25.91■■□□□ 1.74
SHMT1-206ENST00000579558 C8AP07357 584 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 SLFN14P0C7P3 912 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 PPM1LQ5SGD2 360 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 ARMCX5Q6P1M9 558 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 GRAMD1CQ8IYS0 662 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 CBWD1Q9BRT8 395 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 LRFN3Q9BTN0 628 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 SCAND2PQ9GZW5 306 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-206ENST00000579558 WDR6Q9NNW5 1121 aaKnown RBP25.91■■□□□ 1.74
SHMT1-206ENST00000579558 RAPGEFL1Q9UHV5 662 aa25.91■■□□□ 1.74
SHMT1-206ENST00000579558 TULP1O00294 542 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 PPEF2O14830 753 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 EIF3DO15371 548 aaKnown RBP eCLIP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 ACTN4O43707 911 aaKnown RBP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 CUL4BQ13620 913 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 MRPL58Q14197 206 aaKnown RBP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 CTXN3Q4LDR2 81 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 SLC8B1Q6J4K2 584 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 DSTYKQ6XUX3 929 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 OTOP3Q7RTS5 596 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 PLCD3Q8N3E9 789 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 ZSWIM2Q8NEG5 633 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 NOC3LQ8WTT2 800 aaKnown RBP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 ACSF2Q96CM8 615 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-206ENST00000579558 PCIF1Q9H4Z3 704 aa25.9■■□□□ 1.74
SHMT1-206ENST00000579558 CLUHO75153 1309 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 GOLGA8IPA6NC78 632 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 GOLGA8JA6NMD2 632 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 M0QZQ0 153 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 HNRNPA1P09651 372 aaKnown RBP eCLIP25.89■■□□□ 1.74
SHMT1-206ENST00000579558 AARSP49588 968 aaKnown RBP eCLIP25.89■■□□□ 1.74
SHMT1-206ENST00000579558 ARPP19P56211 112 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 ROR1Q01973 937 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 PTPN21Q16825 1174 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 C9orf57Q5W0N0 161 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 ZNF280DQ6N043 979 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 EPM2AIP1Q7L775 607 aaPredicted RBP25.89■■□□□ 1.74
SHMT1-206ENST00000579558 BRSK2Q8IWQ3 736 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 ZDHHC14Q8IZN3 488 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 SLC7A14Q8TBB6 771 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 EDAQ92838 391 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 RBAKQ9NYW8 714 aaPredicted RBP25.89■■□□□ 1.74
SHMT1-206ENST00000579558 FBXL5Q9UKA1 691 aa25.89■■□□□ 1.74
SHMT1-206ENST00000579558 PVALEFA0A1B0GWK0 134 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 EXTL3O43909 919 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 TBC1D4O60343 1298 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 EHHADHQ08426 723 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 EFCAB13Q8IY85 973 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 DPP3Q9NY33 737 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 USP25Q9UHP3 1055 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 HPSEQ9Y251 543 aa25.88■■□□□ 1.73
SHMT1-206ENST00000579558 HOXA9P31269 272 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 HOXD13P35453 343 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 LILRA4P59901 499 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 ZXDAP98168 799 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 YWHAHQ04917 246 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-206ENST00000579558 UVSSAQ2YD98 709 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 NT5DC4Q86YG4 428 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 GPD1LQ8N335 351 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 ZNF461Q8TAF7 563 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 ZNF507Q8TCN5 953 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 PAGE5Q96GU1 130 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms