RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CCDC149Q6ZUS6 474 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 TDRD5Q8NAT2 981 aaKnown RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 GLIS3Q8NEA6 775 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 ZSWIM2Q8NEG5 633 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 LEO1Q8WVC0 666 aaPredicted RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 SMG7Q92540 1137 aaKnown RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 PRKD2Q9BZL6 878 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 MAGEF1Q9HAY2 307 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 DOCK8Q8NF50 2099 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 SCN1AP35498 2009 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 PPEF2O14830 753 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 TBC1D4O60343 1298 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 CASP1P29466 404 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 KRT85P78386 507 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 POU5F1Q01860 360 aaKnown RBP16.06■□□□□ 0.16
USP28-204ENST00000537642 TMEM132DQ14C87 1099 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 ZDHHC14Q8IZN3 488 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 SYCP3Q8IZU3 236 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 BEST2Q8NFU1 509 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 EDAQ92838 391 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 ASB7Q9H672 318 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 WDR6Q9NNW5 1121 aaKnown RBP16.06■□□□□ 0.16
USP28-204ENST00000537642 KCNH3Q9ULD8 1083 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 PCDHB8Q9UN66 801 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 DERAQ9Y315 318 aa16.06■□□□□ 0.16
USP28-204ENST00000537642 CLUHO75153 1309 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 PRR33A8MZF0 331 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 M0QZQ0 153 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 C8AP07357 584 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 COL9A1P20849 921 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 GARTP22102 1010 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 AARSP49588 968 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP28-204ENST00000537642 ZXDAP98168 799 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 ROR1Q01973 937 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 PTPN21Q16825 1174 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 LIN9Q5TKA1 542 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 SLC8B1Q6J4K2 584 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 SAAL1Q96ER3 474 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 SPATA32Q96LK8 384 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 CBWD1Q9BRT8 395 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 FAM213AQ9BRX8 229 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 BLZF1Q9H2G9 400 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 TMEM206Q9H813 350 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 PIDD1Q9HB75 910 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 LIMD1Q9UGP4 676 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 SERTAD1Q9UHV2 236 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 C2CD2Q9Y426 696 aa16.05■□□□□ 0.16
USP28-204ENST00000537642 ANO9A1A5B4 782 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 WDR27A2RRH5 827 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 H7C4K7 107 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 ACTN4O43707 911 aaKnown RBP16.04■□□□□ 0.16
USP28-204ENST00000537642 N4BP1O75113 896 aaKnown RBP16.04■□□□□ 0.16
USP28-204ENST00000537642 CMA1P23946 247 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 HOXD13P35453 343 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 AFMP43652 599 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 WNT7BP56706 349 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 EHHADHQ08426 723 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 CUL4BQ13620 913 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 BECN1Q14457 450 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 FAM26FQ5R3K3 315 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 PPM1LQ5SGD2 360 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 C9orf57Q5W0N0 161 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 UNC13DQ70J99 1090 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 EPM2AIP1Q7L775 607 aaPredicted RBP16.04■□□□□ 0.16
USP28-204ENST00000537642 OTOP3Q7RTS5 596 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 EFCAB13Q8IY85 973 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 GRAMD1CQ8IYS0 662 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 PLCD3Q8N3E9 789 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 APPL2Q8NEU8 664 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 SLC7A14Q8TBB6 771 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 ACSF2Q96CM8 615 aaPredicted RBP16.04■□□□□ 0.16
USP28-204ENST00000537642 PYM1Q9BRP8 204 aaKnown RBP16.04■□□□□ 0.16
USP28-204ENST00000537642 RAPGEFL1Q9UHV5 662 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 FBXL5Q9UKA1 691 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 NOTCH4Q99466 2003 aa16.04■□□□□ 0.16
USP28-204ENST00000537642 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.03■□□□□ 0.16
USP28-204ENST00000537642 A0A1B0GVL5 298 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 GOLGA8IPA6NC78 632 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 GOLGA8JA6NMD2 632 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 PIRO00625 290 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 SPTLC1O15269 473 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 EIF3DO15371 548 aaKnown RBP eCLIP16.03■□□□□ 0.16
USP28-204ENST00000537642 CCL16O15467 120 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 ABLIM3O94929 683 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 IL18RAPO95256 599 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 LDHAP00338 332 aaKnown RBP16.03■□□□□ 0.16
USP28-204ENST00000537642 ASGR2P07307 311 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 HNRNPA1P09651 372 aaKnown RBP eCLIP16.03■□□□□ 0.16
USP28-204ENST00000537642 SLFN14P0C7P3 912 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 PFKFB1P16118 471 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 HOXA9P31269 272 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 LILRA4P59901 499 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 UVSSAQ2YD98 709 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 CTXN3Q4LDR2 81 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 ZNF280DQ6N043 979 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 TRIM67Q6ZTA4 783 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 STXBP4Q6ZWJ1 553 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 BRSK2Q8IWQ3 736 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 CEP57L1Q8IYX8 460 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 ZNF507Q8TCN5 953 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms