RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ASB7Q9H672 318 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 TMEM206Q9H813 350 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 MAGEF1Q9HAY2 307 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 ZDHHC7Q9NXF8 308 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 ATP6V1DQ9Y5K8 247 aa22.7■■□□□ 1.22
VPS28-203ENST00000524521 H7C4K7 107 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 TMEM132DQ14C87 1099 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 LIN9Q5TKA1 542 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 CNNM4Q6P4Q7 775 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 CRELD2Q6UXH1 353 aaPredicted RBP22.69■■□□□ 1.22
VPS28-203ENST00000524521 GLIS3Q8NEA6 775 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 EDAQ92838 391 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 ACSF2Q96CM8 615 aaPredicted RBP22.69■■□□□ 1.22
VPS28-203ENST00000524521 PYM1Q9BRP8 204 aaKnown RBP22.69■■□□□ 1.22
VPS28-203ENST00000524521 BLZF1Q9H2G9 400 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 USTQ9Y2C2 406 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 DERAQ9Y315 318 aa22.69■■□□□ 1.22
VPS28-203ENST00000524521 NFICP08651 508 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 GARTP22102 1010 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 CASP1P29466 404 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 ARPP19P56211 112 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 PPM1LQ5SGD2 360 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 OTOP3Q7RTS5 596 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 CEP57L1Q8IYX8 460 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 PLCD3Q8N3E9 789 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 APPL2Q8NEU8 664 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 SAAL1Q96ER3 474 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 FAM213AQ9BRX8 229 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 RHOBTB2Q9BYZ6 727 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 PCIF1Q9H4Z3 704 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 WDR6Q9NNW5 1121 aaKnown RBP22.68■■□□□ 1.22
VPS28-203ENST00000524521 LIMD1Q9UGP4 676 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 SERTAD1Q9UHV2 236 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 PCDHB8Q9UN66 801 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 C2orf16Q68DN1 1984 aa22.68■■□□□ 1.22
VPS28-203ENST00000524521 A0A1B0GVL5 298 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 LDHAP00338 332 aaKnown RBP22.67■■□□□ 1.22
VPS28-203ENST00000524521 C8AP07357 584 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 ZXDAP98168 799 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 POU5F1Q01860 360 aaKnown RBP22.67■■□□□ 1.22
VPS28-203ENST00000524521 MRPL58Q14197 206 aaKnown RBP22.67■■□□□ 1.22
VPS28-203ENST00000524521 CTXN3Q4LDR2 81 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 DSTYKQ6XUX3 929 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 ZDHHC14Q8IZN3 488 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 ZSWIM2Q8NEG5 633 aa22.67■■□□□ 1.22
VPS28-203ENST00000524521 NOC3LQ8WTT2 800 aaKnown RBP22.67■■□□□ 1.22
VPS28-203ENST00000524521 GOLGA8IPA6NC78 632 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 GOLGA8JA6NMD2 632 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 PPEF2O14830 753 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 IL18RAPO95256 599 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 COL9A1P20849 921 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 CMA1P23946 247 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 PTPN21Q16825 1174 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 FAM26FQ5R3K3 315 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 SLC8B1Q6J4K2 584 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 ARMCX5Q6P1M9 558 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 UNC13DQ70J99 1090 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 GRAMD1CQ8IYS0 662 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 SLC7A14Q8TBB6 771 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 CBWD1Q9BRT8 395 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 FBXL5Q9UKA1 691 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 C2CD2Q9Y426 696 aa22.66■■□□□ 1.22
VPS28-203ENST00000524521 TIMM13Q9Y5L4 95 aaPredicted RBP22.66■■□□□ 1.22
VPS28-203ENST00000524521 CLUHO75153 1309 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 PRR33A8MZF0 331 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 M0QZQ0 153 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 TBC1D4O60343 1298 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 PAPLNO95428 1278 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 HNRNPA1P09651 372 aaKnown RBP eCLIP22.65■■□□□ 1.22
VPS28-203ENST00000524521 SLFN14P0C7P3 912 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 PFKFB1P16118 471 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 GBP2P32456 591 aaPredicted RBP22.65■■□□□ 1.22
VPS28-203ENST00000524521 ROR1Q01973 937 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 CUL4BQ13620 913 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 UVSSAQ2YD98 709 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 C9orf57Q5W0N0 161 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 ZNF280DQ6N043 979 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 ZNF461Q8TAF7 563 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 SCAND2PQ9GZW5 306 aaPredicted RBP22.65■■□□□ 1.22
VPS28-203ENST00000524521 DPP3Q9NY33 737 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 POLIQ9UNA4 740 aa22.65■■□□□ 1.22
VPS28-203ENST00000524521 PVALEFA0A1B0GWK0 134 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 CCL16O15467 120 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 ELF1P32519 619 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 LILRA4P59901 499 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 USP37Q86T82 979 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 ZNF507Q8TCN5 953 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 MYO10Q9HD67 2058 aa22.64■■□□□ 1.21
VPS28-203ENST00000524521 ANK1P16157 1881 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 DENND4AQ7Z401 1863 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 ANO9A1A5B4 782 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 WDR27A2RRH5 827 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 PIRO00625 290 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 EIF3DO15371 548 aaKnown RBP eCLIP22.63■■□□□ 1.21
VPS28-203ENST00000524521 ACTN4O43707 911 aaKnown RBP22.63■■□□□ 1.21
VPS28-203ENST00000524521 EXTL3O43909 919 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 XYLBO75191 536 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 ABLIM3O94929 683 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 ASGR2P07307 311 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 HOXA9P31269 272 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms