RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CLK2P49760 499 aaKnown RBP15.47■□□□□ 0.07
HDAC6-220ENST00000477528 GPAT2Q6NUI2 795 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 DNAAF3Q8N9W5 541 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 AGAP1Q9UPQ3 857 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 HUS1O60921 280 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 RALAP11233 206 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 DSG3P32926 999 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 ITGA8P53708 1063 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 OAZ1P54368 228 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 RBP5P82980 135 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 LRRC71Q8N4P6 559 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 EFCC1Q9HA90 598 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 VAV3Q9UKW4 847 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 USP54Q70EL1 1684 aa15.47■□□□□ 0.07
HDAC6-220ENST00000477528 ZSCAN5CA6NGD5 496 aaPredicted RBP15.46■□□□□ 0.07
HDAC6-220ENST00000477528 HBP1O60381 514 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 ITGA4P13612 1032 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 STILQ15468 1287 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 TTC16Q8NEE8 873 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 PRMT1Q99873 361 aaKnown RBP15.46■□□□□ 0.07
HDAC6-220ENST00000477528 PRMT7Q9NVM4 692 aaPredicted RBP15.46■□□□□ 0.07
HDAC6-220ENST00000477528 TPX2Q9ULW0 747 aaKnown RBP15.46■□□□□ 0.07
HDAC6-220ENST00000477528 COPEO14579 308 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 KRT38O76015 456 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 SRGAP2BP0DMP2 458 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 SEC24CP53992 1094 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 DEPDC1BQ8WUY9 529 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 GRAMD1AQ96CP6 724 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 C9orf72Q96LT7 481 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 CGRRF1Q99675 332 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 NACA2Q9H009 215 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 EIF3EP60228 445 aaKnown RBP15.46■□□□□ 0.07
HDAC6-220ENST00000477528 SLC9A9Q8IVB4 645 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 TTYH3Q9C0H2 523 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 NEU2Q9Y3R4 380 aa15.46■□□□□ 0.07
HDAC6-220ENST00000477528 OGTO15294 1046 aa15.46■□□□□ 0.06
HDAC6-220ENST00000477528 WEE2P0C1S8 567 aa15.46■□□□□ 0.06
HDAC6-220ENST00000477528 ATG16L1Q676U5 607 aa15.46■□□□□ 0.06
HDAC6-220ENST00000477528 ERVK-9P63128 1117 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 KYNUQ16719 465 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CLEC16AQ2KHT3 1053 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 ARL13BQ3SXY8 428 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 PHLDB3Q6NSJ2 640 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 MAP4K3Q8IVH8 894 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 ARHGAP42A6NI28 874 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 TNFRSF8P28908 595 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CA8P35219 290 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 TMEM132DQ14C87 1099 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 PARD3BQ8TEW8 1205 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CYFIP2Q96F07 1278 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 TRIM55Q9BYV6 548 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 SLIT2O94813 1529 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 A8MXQ7 604 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 RRM1P23921 792 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 E2F5Q15329 346 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 MUM1Q2TAK8 710 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CDKL3Q8IVW4 592 aaPredicted RBP15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CCDC117Q8IWD4 279 aaPredicted RBP15.45■□□□□ 0.06
HDAC6-220ENST00000477528 SCFD2Q8WU76 684 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 ERAP1Q9NZ08 941 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 PHLPP1O60346 1717 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 PHF20L1A8MW92 1017 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 PLA2G6O60733 806 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 CRCPO75575 148 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 ATP5HO75947 161 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 GNAT1P11488 350 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 GCNT1Q02742 428 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 NFX1Q12986 1120 aaKnown RBP15.45■□□□□ 0.06
HDAC6-220ENST00000477528 EFCAB12Q6NXP0 572 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 EIF1ADQ8N9N8 165 aaKnown RBP15.45■□□□□ 0.06
HDAC6-220ENST00000477528 DNERQ8NFT8 737 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 FBXO25Q8TCJ0 367 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 TTC17Q96AE7 1141 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 SHISA4Q96DD7 197 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 SCYL1Q96KG9 808 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 UBIAD1Q9Y5Z9 338 aa15.45■□□□□ 0.06
HDAC6-220ENST00000477528 TMEM150BA6NC51 233 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 RBAK-RBAKDNI3L0D1 243 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 GH1P01241 217 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 BRD2P25440 801 aaKnown RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 PSMC4P43686 418 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 KIF22Q14807 665 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 DSTYKQ6XUX3 929 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 PPCSQ9HAB8 311 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 ARHGEF37A1IGU5 675 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TOM1L1O75674 476 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 RARGP13631 454 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 SOX10P56693 466 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 SHROOM1Q2M3G4 852 aaPredicted RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 IRF2BP2Q7Z5L9 587 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 C1orf131Q8NDD1 294 aaKnown RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 PRPF31Q8WWY3 499 aaKnown RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 FGFBP2Q9BYJ0 223 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TCP11X1B4DZS4 312 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TRIM66O15016 1216 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TATDN2Q93075 761 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 SEC16BQ96JE7 1060 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 FAM118BQ9BPY3 351 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TRABDQ9H4I3 376 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms