RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 SH3TC2Q8TF17 1288 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 DPP3Q9NY33 737 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 ITGA11Q9UKX5 1188 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 DERAQ9Y315 318 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 PCDHB2Q9Y5E7 798 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 CAPN6Q9Y6Q1 641 aa20.34■□□□□ 0.85
SMC4-209ENST00000468653 RECQL4O94761 1208 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 ATICP31939 592 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 GALCP54803 685 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 MGAT3Q09327 533 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 NFX1Q12986 1120 aaKnown RBP20.33■□□□□ 0.84
SMC4-209ENST00000468653 PTK7Q13308 1070 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 ZNF667Q5HYK9 610 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 UBXN11Q5T124 520 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 PALB2Q86YC2 1186 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 TRMT13Q9NUP7 481 aaKnown RBP20.33■□□□□ 0.84
SMC4-209ENST00000468653 NXF1Q9UBU9 619 aaKnown RBP20.33■□□□□ 0.84
SMC4-209ENST00000468653 ST3GAL5Q9UNP4 418 aa20.33■□□□□ 0.84
SMC4-209ENST00000468653 UQCRHLA0A096LP55 91 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 UQCRHP07919 91 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 AKAP5P24588 427 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 POLR2BP30876 1174 aaKnown RBP20.32■□□□□ 0.84
SMC4-209ENST00000468653 FMO1Q01740 532 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 RBBP8NLQ8NC74 664 aaPredicted RBP20.32■□□□□ 0.84
SMC4-209ENST00000468653 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.32■□□□□ 0.841e-147■■■■■ 345.5
SMC4-209ENST00000468653 TAS2R14Q9NYV8 317 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 PARP2Q9UGN5 583 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 AGAP1Q9UPQ3 857 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 CNTN6Q9UQ52 1028 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 CITO14578 2027 aa20.32■□□□□ 0.84
SMC4-209ENST00000468653 GPR182O15218 404 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 GUCY2FP51841 1108 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 YWHAEP62258 255 aaKnown RBP20.31■□□□□ 0.84
SMC4-209ENST00000468653 RBP5P82980 135 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 WDR72Q3MJ13 1102 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 SCARA5Q6ZMJ2 495 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 ZNF677Q86XU0 584 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CTNNBL1Q8WYA6 563 aaPredicted RBP20.31■□□□□ 0.84
SMC4-209ENST00000468653 DDX1Q92499 740 aaKnown RBP20.31■□□□□ 0.84
SMC4-209ENST00000468653 PCDHB18PQ96TA0 734 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 ENC1O14682 589 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 RTN2O75298 545 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CALCAP01258 141 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CD58P19256 250 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 ABCB4P21439 1286 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 NOP2P46087 812 aaKnown RBP20.31■□□□□ 0.84
SMC4-209ENST00000468653 TUBB2AQ13885 445 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 IFI16Q16666 785 aaKnown RBP20.31■□□□□ 0.84
SMC4-209ENST00000468653 TMEM130Q8N3G9 435 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CXorf38Q8TB03 319 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 HPDLQ96IR7 371 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 TUBB2BQ9BVA1 445 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 STARD7Q9NQZ5 370 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CISHQ9NSE2 258 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 CNTN3Q9P232 1028 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 POLIQ9UNA4 740 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 IPPQ9Y573 584 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 MRFAP1Q9Y605 127 aa20.31■□□□□ 0.84
SMC4-209ENST00000468653 A0A1W2PQ45 241 aaPredicted RBP20.3■□□□□ 0.84
SMC4-209ENST00000468653 A0A1W2PQY0 241 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 FAM170AA1A519 330 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 ANKRD62A6NC57 917 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 KBTBD13C9JR72 458 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 SLU7O95391 586 aaKnown RBP20.3■□□□□ 0.84
SMC4-209ENST00000468653 FTLP02792 175 aaPredicted RBP20.3■□□□□ 0.84
SMC4-209ENST00000468653 WEE2P0C1S8 567 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 TMEM253P0C7T8 217 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 GZMAP12544 262 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 P4HA1P13674 534 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 ASPAP45381 313 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 ALKAL1Q6UXT8 129 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 UBR7Q8N806 425 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 BEST2Q8NFU1 509 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 FAXDC2Q96IV6 333 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 ZMAT2Q96NC0 199 aaKnown RBP20.3■□□□□ 0.84
SMC4-209ENST00000468653 ISCUQ9H1K1 167 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 CXCL16Q9H2A7 254 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 PDCL3Q9H2J4 239 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 CHST12Q9NRB3 414 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 JRKLQ9Y4A0 524 aa20.3■□□□□ 0.84
SMC4-209ENST00000468653 A0A0A6YYK5 440 aaPredicted RBP20.29■□□□□ 0.84
SMC4-209ENST00000468653 ANO9A1A5B4 782 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 ATP1A1P05023 1023 aaKnown RBP20.29■□□□□ 0.84
SMC4-209ENST00000468653 GNA15P30679 374 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 KLK14Q9P0G3 267 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 PTPN22Q9Y2R2 807 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 A0A0U1RQG5 324 aaPredicted RBP20.29■□□□□ 0.84
SMC4-209ENST00000468653 GLRA4Q5JXX5 417 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 SMG8Q8ND04 991 aaKnown RBP20.29■□□□□ 0.84
SMC4-209ENST00000468653 THAP2Q9H0W7 228 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 UNC93B1Q9H1C4 597 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 RNF39Q9H2S5 420 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 VRTNQ9H8Y1 702 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 PUF60Q9UHX1 559 aaKnown RBP20.29■□□□□ 0.84
SMC4-209ENST00000468653 CDC23Q9UJX2 597 aa20.29■□□□□ 0.84
SMC4-209ENST00000468653 THAP12O43422 761 aa20.28■□□□□ 0.84
SMC4-209ENST00000468653 PALMO75781 387 aa20.28■□□□□ 0.84
SMC4-209ENST00000468653 GHRP10912 638 aa20.28■□□□□ 0.84
SMC4-209ENST00000468653 ZSCAN20P17040 1043 aaPredicted RBP20.28■□□□□ 0.84
SMC4-209ENST00000468653 ZNF132P52740 706 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms