RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 APOA1P02647 267 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 MTHFRP42898 656 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ANGPT1Q15389 498 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 GPD1LQ8N335 351 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 DCUN1D1Q96GG9 259 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 OMDQ99983 421 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 LSM14BQ9BX40 385 aaKnown RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 GDPD2Q9HCC8 539 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 FAM198AQ9UFP1 575 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 BAG5Q9UL15 447 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 PPME1Q9Y570 386 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CEMIPQ8WUJ3 1361 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 PFKFB2O60825 505 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 ALADP13716 330 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 NR2F2P24468 414 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 CUL3Q13618 768 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 PCNX4Q63HM2 1172 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 TRIM11Q96F44 468 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 LRGUKQ96M69 825 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 UROC1Q96N76 676 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 POLR3CQ9BUI4 534 aaPredicted RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 CELF4Q9BZC1 486 aaKnown RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 IL23AQ9NPF7 189 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 HDAC6Q9UBN7 1215 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 TLK1Q9UKI8 766 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 HEMK1Q9Y5R4 338 aaPredicted RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 ATP8B1O43520 1251 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 CTSEP14091 401 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 DHPSP49366 369 aaPredicted RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 MRPL28Q13084 256 aaKnown RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 SLC44A4Q53GD3 710 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 CAPRIN2Q6IMN6 1127 aaKnown RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 ZNF557Q8N988 423 aaPredicted RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 HELQQ8TDG4 1101 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 MAML3Q96JK9 1138 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 MTA3Q9BTC8 594 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 SIK2Q9H0K1 926 aa7.71□□□□□ -1.17
SCN9A-202ENST00000409435 POLMQ9NP87 494 aaPredicted RBP7.71□□□□□ -1.17
SCN9A-202ENST00000409435 WDR19Q8NEZ3 1342 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 M0QYV0 167 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SUN1O94901 812 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 IFNAR1P17181 557 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 CD52P31358 61 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 GLUD2P49448 558 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PSMC1P62191 440 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 APBA1Q02410 837 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 TYRO3Q06418 890 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ORC2Q13416 577 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 MTX1Q13505 466 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF235Q14590 738 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 KRT71Q3SY84 523 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SGO2Q562F6 1265 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PRPF38BQ5VTL8 546 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 OLFML2BQ68BL8 750 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ANKS3Q6ZW76 656 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF589Q86UQ0 364 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 CCDC197Q8NCU1 140 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SYTL5Q8TDW5 730 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SCLYQ96I15 445 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 A1CFQ9NQ94 594 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ORC6Q9Y5N6 252 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SESN1Q9Y6P5 492 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 A0A1B0GVL5 298 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 NFIBO00712 420 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 APODP05090 189 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PDGFRBP09619 1106 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 VCLP18206 1134 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 NME3Q13232 169 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 TBC1D10CQ8IV04 446 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PDS5AQ29RF7 1337 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 SCP2P22307 547 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PTPN11Q06124 597 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PHKG1Q16816 387 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 DUSP28Q4G0W2 176 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF394Q53GI3 561 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 CELF3Q5SZQ8 465 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 FGD4Q96M96 766 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 DNAJC25Q9H1X3 360 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 CYP26B1Q9NR63 512 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 EPS15L1Q9UBC2 864 aa7.71□□□□□ -1.18
SCN9A-202ENST00000409435 DIS3Q9Y2L1 958 aaKnown RBP7.71□□□□□ -1.18
SCN9A-202ENST00000409435 ASTN2O75129 1339 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ITIH6Q6UXX5 1313 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 hCG_2014768A0A024R1R8 64 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PRMT3O60678 531 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 DDHD2O94830 711 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 LCP1P13796 627 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 KRT4P19013 534 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 CARSP49589 748 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PTK7Q13308 1070 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 FAM133BQ5BKY9 247 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 NOL9Q5SY16 702 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 DNAJC24Q6P3W2 148 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 HDDC2Q7Z4H3 204 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 RFX6Q8HWS3 928 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 STAG2Q8N3U4 1231 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ATL2Q8NHH9 583 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms