RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 FAM117BQ6P1L5 589 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 ANKMY2Q8IV38 441 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 GRAMD1AQ96CP6 724 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 PABPC3Q9H361 631 aaKnown RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 TRABDQ9H4I3 376 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 HMX1Q9NP08 348 aaPredicted RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 PI4K2BG5E9Z4 385 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 HBP1O60381 514 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 CAPN15O75808 1086 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 EVX2Q03828 476 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 MAPK7Q13164 816 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 KYNUQ16719 465 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 CDO1Q16878 200 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 P3H1Q32P28 736 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 RTFDC1Q9BY42 306 aaPredicted RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 CARD9Q9H257 536 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 UVRAGQ9P2Y5 699 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 PPARGC1AQ9UBK2 798 aaKnown RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 IP6K2Q9UHH9 426 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 GLTPD2A6NH11 291 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 COPEO14579 308 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 MSH4O15457 936 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 YWHABP31946 246 aaKnown RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 GARSP41250 739 aaKnown RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 GPD1LQ8N335 351 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 AFAP1L2Q8N4X5 818 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 RNF149Q8NC42 400 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 AKT1S1Q96B36 256 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 NUDCD1Q96RS6 583 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 TMEM117Q9H0C3 514 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 TADA2AO75478 443 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 RFC5P40937 340 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 RECQLP46063 649 aaPredicted RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 SLC12A2P55011 1212 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 TMPRSS15P98073 1019 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 CDR2Q01850 454 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 PCGF5Q86SE9 256 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 DEPDC1BQ8WUY9 529 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ALG13Q9NP73 1137 aaKnown RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 PRPSAP2O60256 369 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ITGA8P53708 1063 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 KLHL38Q2WGJ6 581 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 GLIS3Q8NEA6 775 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 SPDL1Q96EA4 605 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 DDX20Q9UHI6 824 aaKnown RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 BCAP29Q9UHQ4 241 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 IPO11Q9UI26 975 aaKnown RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 SUFUQ9UMX1 484 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 CCDC195A0A1B0GUA6 201 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 IGF2BP3O00425 579 aaKnown RBP eCLIP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 DGAT1O75907 488 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 AKAP3O75969 853 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 KITP10721 976 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 PPIL2Q13356 520 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 PPP2R5CQ13362 524 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 C4orf50Q6ZRC1 276 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 SYDE1Q6ZW31 735 aaPredicted RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 NDUFAF2Q8N183 169 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 C3orf20Q8ND61 904 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ZSWIM1Q9BR11 485 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 MKNK1Q9BUB5 465 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 NOD2Q9HC29 1040 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 CALB1P05937 261 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 VIL1P09327 827 aaKnown RBP13.01□□□□□ -0.33
COLCA1-201ENST00000355430 NNMTP40261 264 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ARL4AP40617 200 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 NFIAQ12857 509 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ATG16L1Q676U5 607 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 TMEM35BQ8NCS4 154 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 SGSM3Q96HU1 749 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 ACAP3Q96P50 834 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 TSC22D3Q99576 134 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 AGPAT3Q9NRZ7 376 aa13.01□□□□□ -0.33
COLCA1-201ENST00000355430 FOXN3O00409 490 aaPredicted RBP13□□□□□ -0.33
COLCA1-201ENST00000355430 HOXA2O43364 376 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 RBBP5Q15291 538 aaKnown RBP13□□□□□ -0.33
COLCA1-201ENST00000355430 DACT2Q5SW24 774 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 KCNK18Q7Z418 384 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 AGBL1Q96MI9 1066 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 RBM15Q96T37 977 aaKnown RBP eCLIP13□□□□□ -0.33
COLCA1-201ENST00000355430 RNF208Q9H0X6 261 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 UBE4BO95155 1302 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 CFAP69A5D8W1 941 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 ZBED1O96006 694 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 TM4SF1P30408 202 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 SLC1A1P43005 524 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 SKOR1P84550 965 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 ZNF699Q32M78 642 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 TMEM119Q4V9L6 283 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 C4orf33Q8N1A6 199 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 MSL3Q8N5Y2 521 aaKnown RBP13□□□□□ -0.33
COLCA1-201ENST00000355430 GPRASP2Q96D09 838 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 ROPN1BQ9BZX4 212 aaPredicted RBP13□□□□□ -0.33
COLCA1-201ENST00000355430 RIOX1Q9H6W3 641 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 ROPN1Q9HAT0 212 aaPredicted RBP13□□□□□ -0.33
COLCA1-201ENST00000355430 AIPL1Q9NZN9 384 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 PPP1R9AQ9ULJ8 1098 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 NFAT5O94916 1531 aa13□□□□□ -0.33
COLCA1-201ENST00000355430 ARFIP2P53365 341 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms