RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TLR3O15455 904 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 VHLP40337 213 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 YARSP54577 528 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 ALDH18A1P54886 795 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 YWHAEP62258 255 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 ELF3P78545 371 aaPredicted RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 P3H1Q32P28 736 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 SYN2Q92777 582 aaPredicted RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 EFHD1Q9BUP0 239 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 TUFT1Q9NNX1 390 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 SENP1Q9P0U3 644 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 NWD2Q9ULI1 1742 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 SYCP2LQ5T4T6 812 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 CENPPQ6IPU0 288 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 RHPN2Q8IUC4 686 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 ATP11CQ8NB49 1132 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 CYP2W1Q8TAV3 490 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 RBM41Q96IZ5 413 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 NUDT12Q9BQG2 462 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 SMG5Q9UPR3 1016 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 ICAM1P05362 532 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 ALDH5A1P51649 535 aaPredicted RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 RPS6P62753 249 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 STXBP2Q15833 593 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TMEM259Q4ZIN3 620 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 WDR59Q6PJI9 974 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 SLC30A10Q6XR72 485 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 SLC10A4Q96EP9 437 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TEX13BQ9BXU2 312 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 VPS33BQ9H267 617 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 ELP3Q9H9T3 547 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 RHBDL2Q9NX52 303 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 APEX2Q9UBZ4 518 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 PABPN1LA6NDY0 278 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 ZBED1O96006 694 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TMEM253P0C7T8 217 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 MYBP10242 640 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 FMO5P49326 533 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 THOC5Q13769 683 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 CYTH1Q15438 398 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 FAM160B1Q5W0V3 765 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TMEM270Q6UE05 265 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 MIS12Q9H081 205 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 THAP2Q9H0W7 228 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 KRT38O76015 456 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 CNGA1P29973 690 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TFAMQ00059 246 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 RHOT1Q8IXI2 618 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 HSPH1Q92598 858 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 DUSP9Q99956 384 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 MXRA8Q9BRK3 442 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 METTL5Q9NRN9 209 aaKnown RBP16.21■□□□□ 0.19
SHH-201ENST00000297261 GABBR1Q9UBS5 961 aa16.21■□□□□ 0.19
SHH-201ENST00000297261 TRIP10Q15642 601 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 JADE1Q6IE81 842 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 LVRNQ6Q4G3 990 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 SCARA5Q6ZMJ2 495 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 SH3RF1Q7Z6J0 888 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 CCNYQ8ND76 341 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 AGAP11Q8TF27 550 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 DEPDC1BQ8WUY9 529 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 SNRNP27Q8WVK2 155 aaKnown RBP16.21■□□□□ 0.18
SHH-201ENST00000297261 ABCF3Q9NUQ8 709 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 PCSK1NQ9UHG2 260 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 GLI3P10071 1580 aa16.21■□□□□ 0.18
SHH-201ENST00000297261 C4BP0C0L5 1744 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 ARHGAP10A1A4S6 786 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 C19orf81C9J6K1 198 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 H3BRJ5 948 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 HSPA4LO95757 839 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 GHRP10912 638 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 PSMA2P25787 234 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 IGBP1P78318 339 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 BTKQ06187 659 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 HIC1Q14526 733 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 MEA1Q16626 185 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 HIF1AQ16665 826 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 H0YCG3 227 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 RTN2O75298 545 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 CDO1Q16878 200 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 EDRF1Q3B7T1 1238 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 FKBP1CQ5VVH2 108 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 SWSAP1Q6NVH7 229 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 TATDN1Q6P1N9 297 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 MOXD1Q6UVY6 613 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 SH3BP5LQ7L8J4 393 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 TMC3Q7Z5M5 1100 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 LCA5Q86VQ0 697 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 CDAN1Q8IWY9 1227 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 DNAAF3Q8N9W5 541 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 ACTRT1Q8TDG2 376 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 KAT2BQ92831 832 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 TAAR1Q96RJ0 339 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 RANBP17Q9H2T7 1088 aaKnown RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 KCNH7Q9NS40 1196 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 NEU2Q9Y3R4 380 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 NFIBO00712 420 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 SLC16A4O15374 487 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 TNNC2P02585 160 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms