RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 CLUL1Q15846 466 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 LBX2Q6XYB7 198 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 ZNF571Q7Z3V5 609 aaPredicted RBP13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 ZNF507Q8TCN5 953 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 LENG1Q96BZ8 264 aaPredicted RBP13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 MED4Q9NPJ6 270 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 STRNO43815 780 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 STAG3L1P0CL83 205 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 EPHB4P54760 987 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 VSNL1P62760 191 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 MTMR3Q13615 1198 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 NAB2Q15742 525 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 GRIK4Q16099 956 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 GEN1Q17RS7 908 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 C4orf50Q6ZRC1 276 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 ENOSF1Q7L5Y1 443 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 ASAP3Q8TDY4 903 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 NIF3L1Q9GZT8 377 aa13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 TIMM13Q9Y5L4 95 aaPredicted RBP13.12□□□□□ -0.31
PCDHB11-201ENST00000354757 SPDYE5A6NIY4 337 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 RTN2O75298 545 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 ZBED1O96006 694 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 LGALS2P05162 132 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CALB1P05937 261 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 ELF1P32519 619 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CDH8P55286 799 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CCDC121Q6ZUS5 278 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CEP120Q8N960 986 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 TINF2Q9BSI4 451 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CYP3A7-CYP3A51PA0A087WV96 503 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 C17orf102A2RUQ5 167 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CYP3A7P24462 503 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CDH6P55285 790 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 NAA25Q14CX7 972 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 NOTUMQ6P988 496 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 TRAPPC11Q7Z392 1133 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 DBR1Q9UK59 544 aaKnown RBP13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 VAV3Q9UKW4 847 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 SSX2IPQ9Y2D8 614 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 ALG6Q9Y672 507 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 CICQ96RK0 1608 aaPredicted RBP13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 GHRP10912 638 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 PDGFRAP16234 1089 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 COMTP21964 271 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 OR1G1P47890 313 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 PPP3CAQ08209 521 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 HHATQ5VTY9 493 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 ACOT1Q86TX2 421 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 NSRP1Q9H0G5 558 aaKnown RBP13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 SAMD15Q9P1V8 674 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 TRAF3IP3Q9Y228 551 aa13.11□□□□□ -0.31
PCDHB11-201ENST00000354757 MIF4GDA9UHW6 222 aaKnown RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 KBTBD13C9JR72 458 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 ITGA4P13612 1032 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CYP24A1Q07973 514 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 EFCAB13Q8IY85 973 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CAPS2Q9BXY5 557 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RNF14Q9UBS8 474 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 A0A087WUV0 522 aaPredicted RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 PABPN1LA6NDY0 278 aaKnown RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 MANSC4A6NHS7 340 aaPredicted RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CLTAP09496 248 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 C1orf228Q6PIY5 440 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 MPZL3Q6UWV2 235 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 GPR142Q7Z601 462 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 DDX42Q86XP3 938 aaKnown RBP eCLIP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 ARHGEF19Q8IW93 802 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CCDC13Q8IYE1 715 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 APPL2Q8NEU8 664 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CYFIP2Q96F07 1278 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SNTG2Q9NY99 539 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RRN3P2A6NIE6 340 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 C2CD2LO14523 706 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SART1O43290 800 aaKnown RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SASH3O75995 380 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RFX1P22670 979 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 ANXA13P27216 316 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 TSPY1Q01534 308 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CUL2Q13617 745 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 LRRC55Q6ZSA7 311 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 ZNF560Q96MR9 790 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 DNAJC7Q99615 494 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 TRIM51Q9BSJ1 452 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RBM12Q9NTZ6 932 aaKnown RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 ZNF214Q9UL59 606 aaPredicted RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SYNPO2Q9UMS6 1093 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RNF225M0QZC1 329 aaPredicted RBP13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SLC26A4O43511 780 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 PPFIA4O75335 1185 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 RNF180Q86T96 592 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CCDC33Q8N5R6 958 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 CLEC4DQ8WXI8 215 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 AFG3L2Q9Y4W6 797 aa13.1□□□□□ -0.31
PCDHB11-201ENST00000354757 SYNGAP1Q96PV0 1343 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 F8VZ95 297 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 GLRA2P23416 452 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 HSD17B4P51659 736 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 BCAR1P56945 870 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 ZKSCAN8Q15776 578 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms