RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeastyeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUB1YNL016W YPR147CQ06522 304 aaKnown RBP3.38□□□□□ -1.87
PUB1YNL016W MRX9Q07349 420 aaKnown RBP3.38□□□□□ -1.87
PUB1YNL016W YDL114WQ07530 308 aa3.38□□□□□ -1.87
PUB1YNL016W HEM25Q07534 307 aa3.38□□□□□ -1.87
PUB1YNL016W COQ10Q08058 207 aa3.38□□□□□ -1.87
PUB1YNL016W YOL024WQ08172 172 aa3.38□□□□□ -1.87
PUB1YNL016W HNT3Q08702 217 aa3.38□□□□□ -1.87
PUB1YNL016W RSA1Q08932 381 aa3.38□□□□□ -1.87
PUB1YNL016W VPS68Q12016 184 aa3.38□□□□□ -1.87
PUB1YNL016W USB1Q12208 290 aaKnown RBP3.38□□□□□ -1.87
PUB1YNL016W FRE8Q12209 686 aa3.38□□□□□ -1.87
PUB1YNL016W YGK3Q12222 375 aaPredicted RBP3.38□□□□□ -1.87
PUB1YNL016W TPO4Q12256 659 aa3.38□□□□□ -1.87
PUB1YNL016W YDL199CQ12407 687 aa3.38□□□□□ -1.87
PUB1YNL016W UBR1P19812 1950 aa3.37□□□□□ -1.87
PUB1YNL016W YAL064W-BO13512 126 aa3.37□□□□□ -1.87
PUB1YNL016W RPN13O13563 156 aa3.37□□□□□ -1.87
PUB1YNL016W MET2P08465 486 aa3.37□□□□□ -1.87
PUB1YNL016W ZWF1P11412 505 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W DPM1P14020 267 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W SCL1P21243 252 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W AAT2P23542 418 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W ALK2P32789 676 aaPredicted RBP3.37□□□□□ -1.87
PUB1YNL016W SIP2P34164 415 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W GOS1P38736 223 aa3.37□□□□□ -1.87
PUB1YNL016W SEO1P39709 593 aa3.37□□□□□ -1.87
PUB1YNL016W YEL028WP39989 153 aa3.37□□□□□ -1.87
PUB1YNL016W KRE29P40026 464 aa3.37□□□□□ -1.87
PUB1YNL016W YIL054WP40524 105 aa3.37□□□□□ -1.87
PUB1YNL016W MCM22P47167 239 aa3.37□□□□□ -1.87
PUB1YNL016W TRM9P49957 279 aa3.37□□□□□ -1.87
PUB1YNL016W YGR042WP53227 271 aa3.37□□□□□ -1.87
PUB1YNL016W YNR066CP53752 436 aa3.37□□□□□ -1.87
PUB1YNL016W FYV6P53913 173 aa3.37□□□□□ -1.87
PUB1YNL016W YMR279CQ03263 540 aa3.37□□□□□ -1.87
PUB1YNL016W PEX30Q06169 523 aa3.37□□□□□ -1.87
PUB1YNL016W SWC7Q06707 132 aa3.37□□□□□ -1.87
PUB1YNL016W DTD1Q07648 150 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W RRS1Q08746 203 aaKnown RBP3.37□□□□□ -1.87
PUB1YNL016W MMT2Q08970 484 aa3.37□□□□□ -1.87
PUB1YNL016W RFM1Q12192 310 aa3.37□□□□□ -1.87
PUB1YNL016W MCT1Q12283 360 aa3.37□□□□□ -1.87
PUB1YNL016W YLR126CQ12288 251 aa3.37□□□□□ -1.87
PUB1YNL016W PCL9Q12477 304 aa3.37□□□□□ -1.87
PUB1YNL016W YPL119C-AQ3E751 87 aa3.37□□□□□ -1.87
PUB1YNL016W RPL23AP0CX41 137 aaKnown RBP3.36□□□□□ -1.87
PUB1YNL016W RPL23BP0CX42 137 aaKnown RBP3.36□□□□□ -1.87
PUB1YNL016W ERD1P16151 362 aa3.36□□□□□ -1.87
PUB1YNL016W CDC43P18898 376 aa3.36□□□□□ -1.87
PUB1YNL016W IFM1P25038 676 aa3.36□□□□□ -1.87
PUB1YNL016W RPL16AP26784 199 aaKnown RBP3.36□□□□□ -1.87
PUB1YNL016W SPS18P32572 300 aa3.36□□□□□ -1.87
PUB1YNL016W RCK1P38622 512 aa3.36□□□□□ -1.87
PUB1YNL016W IKS1P47042 667 aa3.36□□□□□ -1.87
PUB1YNL016W ATP23P53722 227 aa3.36□□□□□ -1.87
PUB1YNL016W TIM44Q01852 431 aa3.36□□□□□ -1.87
PUB1YNL016W ABF2Q02486 183 aa3.36□□□□□ -1.87
PUB1YNL016W LOA1Q06508 300 aa3.36□□□□□ -1.87
PUB1YNL016W YEH2Q07950 538 aa3.36□□□□□ -1.87
PUB1YNL016W SNX3Q08826 162 aaKnown RBP3.36□□□□□ -1.87
PUB1YNL016W YLR053CQ12026 108 aa3.36□□□□□ -1.87
PUB1YNL016W OCA6Q12454 224 aa3.36□□□□□ -1.87
PUB1YNL016W AGC1Q12482 902 aa3.36□□□□□ -1.87
PUB1YNL016W NOT5Q12514 560 aaPredicted RBP3.36□□□□□ -1.87
PUB1YNL016W DDP1Q99321 188 aaKnown RBP3.36□□□□□ -1.87
PUB1YNL016W YOL163WP0CF20 169 aa3.35□□□□□ -1.87
PUB1YNL016W GRX2P17695 143 aaKnown RBP3.35□□□□□ -1.87
PUB1YNL016W YCR022CP25620 114 aa3.35□□□□□ -1.87
PUB1YNL016W INO2P26798 304 aa3.35□□□□□ -1.87
PUB1YNL016W FUN26P31381 517 aa3.35□□□□□ -1.87
PUB1YNL016W AEP1P32493 518 aa3.35□□□□□ -1.87
PUB1YNL016W HOT13P36078 116 aa3.35□□□□□ -1.87
PUB1YNL016W MRPL3P36516 390 aa3.35□□□□□ -1.87
PUB1YNL016W YHR127WP38833 243 aaKnown RBP3.35□□□□□ -1.87
PUB1YNL016W MDM31P38880 579 aa3.35□□□□□ -1.87
PUB1YNL016W TIM17P39515 158 aa3.35□□□□□ -1.87
PUB1YNL016W MRPL49P40858 161 aaPredicted RBP3.35□□□□□ -1.87
PUB1YNL016W YJL016WP47072 561 aa3.35□□□□□ -1.87
PUB1YNL016W YJR056CP47115 236 aa3.35□□□□□ -1.87
PUB1YNL016W MOG1P47123 218 aa3.35□□□□□ -1.87
PUB1YNL016W BIR1P47134 954 aa3.35□□□□□ -1.87
PUB1YNL016W SBH2P52871 88 aa3.35□□□□□ -1.87
PUB1YNL016W TOS8P53147 276 aa3.35□□□□□ -1.87
PUB1YNL016W NQM1P53228 333 aaPredicted RBP3.35□□□□□ -1.87
PUB1YNL016W SYF2P53277 215 aaPredicted RBP3.35□□□□□ -1.87
PUB1YNL016W PDR17P53844 350 aa3.35□□□□□ -1.87
PUB1YNL016W RHO3Q00245 231 aaKnown RBP3.35□□□□□ -1.87
PUB1YNL016W SCS7Q03529 384 aa3.35□□□□□ -1.87
PUB1YNL016W YML018CQ03730 393 aa3.35□□□□□ -1.87
PUB1YNL016W GMC1Q04399 608 aa3.35□□□□□ -1.87
PUB1YNL016W YMR315WQ04869 349 aaKnown RBP3.35□□□□□ -1.87
PUB1YNL016W FAR10Q06001 478 aa3.35□□□□□ -1.87
PUB1YNL016W SEI1Q06058 285 aa3.35□□□□□ -1.87
PUB1YNL016W DXO1Q06349 442 aa3.35□□□□□ -1.87
PUB1YNL016W NOC4Q06512 552 aaPredicted RBP3.35□□□□□ -1.87
PUB1YNL016W HEM4P06174 275 aa3.34□□□□□ -1.88
PUB1YNL016W PIS1P06197 220 aaKnown RBP3.34□□□□□ -1.88
PUB1YNL016W UBC8P28263 218 aa3.34□□□□□ -1.88
PUB1YNL016W AGA1P32323 725 aa3.34□□□□□ -1.88
PUB1YNL016W MDH3P32419 343 aaKnown RBP RIP-Chip data3.34□□□□□ -1.88not detected
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms