RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W SNZ2P53824 298 aa4.33□□□□□ -1.72
PRP40YKL012W SWT21P53873 357 aaPredicted RBP4.33□□□□□ -1.72
PRP40YKL012W RHO3Q00245 231 aaKnown RBP4.33□□□□□ -1.72
PRP40YKL012W SPG4Q04438 115 aa4.33□□□□□ -1.72
PRP40YKL012W AUS1Q08409 1394 aa4.33□□□□□ -1.72
PRP40YKL012W RPS19AP07280 144 aaKnown RBP4.32□□□□□ -1.72
PRP40YKL012W RPS19BP07281 144 aaPredicted RBP4.32□□□□□ -1.72
PRP40YKL012W COS2P0CX12 379 aa4.32□□□□□ -1.72
PRP40YKL012W COS3P0CX13 379 aa4.32□□□□□ -1.72
PRP40YKL012W COS4P43542 379 aa4.32□□□□□ -1.72
PRP40YKL012W COQ5P49017 307 aa4.32□□□□□ -1.72
PRP40YKL012W GIM3P53900 129 aa4.32□□□□□ -1.72
PRP40YKL012W YPR147CQ06522 304 aaKnown RBP4.32□□□□□ -1.72
PRP40YKL012W USO1P25386 1790 aa4.32□□□□□ -1.72
PRP40YKL012W YIL177CP40434 1758 aa4.32□□□□□ -1.72
PRP40YKL012W YJL225CP40889 1758 aa4.32□□□□□ -1.72
PRP40YKL012W CKA2P19454 339 aa4.32□□□□□ -1.72
PRP40YKL012W YOX1P34161 385 aa4.32□□□□□ -1.72
PRP40YKL012W CSG2P35206 410 aa4.32□□□□□ -1.72
PRP40YKL012W BDH1P39714 382 aa4.32□□□□□ -1.72
PRP40YKL012W PRE6P40303 254 aaKnown RBP4.32□□□□□ -1.72
PRP40YKL012W YGR067CP53243 804 aa4.32□□□□□ -1.72
PRP40YKL012W NNT1Q05874 261 aa4.32□□□□□ -1.72
PRP40YKL012W ATG5Q12380 294 aa4.32□□□□□ -1.72
PRP40YKL012W CDC10P25342 322 aaKnown RBP4.31□□□□□ -1.72
PRP40YKL012W NTF2P33331 125 aaKnown RBP4.31□□□□□ -1.72
PRP40YKL012W YHR127WP38833 243 aaKnown RBP4.31□□□□□ -1.72
PRP40YKL012W CPR7P47103 393 aa4.31□□□□□ -1.72
PRP40YKL012W CUS2P53830 285 aaPredicted RBP4.31□□□□□ -1.72
PRP40YKL012W YDL211CQ12121 372 aa4.31□□□□□ -1.72
PRP40YKL012W GET4Q12125 312 aa4.31□□□□□ -1.72
PRP40YKL012W QCR6P00127 147 aa4.3□□□□□ -1.72
PRP40YKL012W DPB2P24482 689 aaPredicted RBP4.3□□□□□ -1.72
PRP40YKL012W MGM101P32787 269 aaKnown RBP4.3□□□□□ -1.72
PRP40YKL012W YFL012WP43580 148 aa4.3□□□□□ -1.72
PRP40YKL012W FUS3P16892 353 aaKnown RBP4.3□□□□□ -1.72
PRP40YKL012W GDH2P33327 1092 aaKnown RBP4.3□□□□□ -1.72
PRP40YKL012W DRE2P36152 348 aa4.3□□□□□ -1.72
PRP40YKL012W ARN2P38724 620 aa4.3□□□□□ -1.72
PRP40YKL012W YNL194CP40169 301 aa4.3□□□□□ -1.72
PRP40YKL012W RPE1P46969 238 aa4.3□□□□□ -1.72
PRP40YKL012W HAM1P47119 197 aaKnown RBP4.3□□□□□ -1.72
PRP40YKL012W MIC26P50087 233 aa4.3□□□□□ -1.72
PRP40YKL012W MRH4P53166 561 aa4.3□□□□□ -1.72
PRP40YKL012W SMD1Q02260 146 aaPredicted RBP4.3□□□□□ -1.72
PRP40YKL012W YMR226CQ05016 267 aaKnown RBP4.3□□□□□ -1.72
PRP40YKL012W CDC123Q05791 360 aa4.3□□□□□ -1.72
PRP40YKL012W SEI1Q06058 285 aa4.3□□□□□ -1.72
PRP40YKL012W YLR126CQ12288 251 aa4.3□□□□□ -1.72
PRP40YKL012W SSO1P32867 290 aa4.29□□□□□ -1.72
PRP40YKL012W MRPS9P38120 278 aa4.29□□□□□ -1.72
PRP40YKL012W YBL081WP38180 368 aaKnown RBP4.29□□□□□ -1.72
PRP40YKL012W CWC23P52868 283 aaPredicted RBP4.29□□□□□ -1.72
PRP40YKL012W OSH6Q02201 448 aa4.29□□□□□ -1.72
PRP40YKL012W YMR114CQ04471 368 aaKnown RBP4.29□□□□□ -1.72
PRP40YKL012W MRX8Q05473 314 aa4.29□□□□□ -1.72
PRP40YKL012W RRP40Q08285 240 aaKnown RBP4.29□□□□□ -1.72
PRP40YKL012W TY4B-HP0C2J7 1802 aa4.29□□□□□ -1.72
PRP40YKL012W TY4B-JP47024 1803 aa4.29□□□□□ -1.72
PRP40YKL012W KRE5P22023 1365 aa4.28□□□□□ -1.72
PRP40YKL012W CPT1P17898 393 aa4.28□□□□□ -1.72
PRP40YKL012W MRPL39P36533 70 aa4.28□□□□□ -1.72
PRP40YKL012W RFC4P40339 323 aaKnown RBP4.28□□□□□ -1.72
PRP40YKL012W TVP15Q03860 143 aa4.28□□□□□ -1.72
PRP40YKL012W BCY1P07278 416 aaKnown RBP4.27□□□□□ -1.73
PRP40YKL012W YHB1P39676 399 aaKnown RBP4.27□□□□□ -1.73
PRP40YKL012W TRM9P49957 279 aa4.27□□□□□ -1.73
PRP40YKL012W RRP5Q05022 1729 aaKnown RBP4.27□□□□□ -1.73
PRP40YKL012W SPT3P06844 337 aa4.27□□□□□ -1.73
PRP40YKL012W PRE7P23724 241 aaKnown RBP4.27□□□□□ -1.73
PRP40YKL012W MCM22P47167 239 aa4.27□□□□□ -1.73
PRP40YKL012W YJR149WP47177 404 aa4.27□□□□□ -1.73
PRP40YKL012W YPL039WQ03080 316 aa4.27□□□□□ -1.73
PRP40YKL012W SYC1Q08553 188 aaPredicted RBP4.27□□□□□ -1.73
PRP40YKL012W APC1P53886 1748 aa4.26□□□□□ -1.73
PRP40YKL012W SNA3P14359 133 aa4.26□□□□□ -1.73
PRP40YKL012W TAF14P35189 244 aa4.26□□□□□ -1.73
PRP40YKL012W YDR124WQ04608 324 aa4.26□□□□□ -1.73
PRP40YKL012W YOR186WQ08560 144 aa4.26□□□□□ -1.73
PRP40YKL012W YPL264CQ08980 353 aa4.26□□□□□ -1.73
PRP40YKL012W YPS3Q12303 508 aa4.26□□□□□ -1.73
PRP40YKL012W DCN1Q12395 269 aa4.26□□□□□ -1.73
PRP40YKL012W YDR157WA0A023PZE8 133 aa4.25□□□□□ -1.73
PRP40YKL012W YPK2P18961 677 aa4.25□□□□□ -1.73
PRP40YKL012W NSA1P53136 463 aaPredicted RBP4.25□□□□□ -1.73
PRP40YKL012W YGL034CP53186 121 aa4.25□□□□□ -1.73
PRP40YKL012W YPL150WQ12152 901 aa4.25□□□□□ -1.73
PRP40YKL012W YRA1Q12159 226 aaKnown RBP4.25□□□□□ -1.73
PRP40YKL012W YBL008W-AQ3E821 79 aa4.25□□□□□ -1.73
PRP40YKL012W CUP2P15315 225 aa4.25□□□□□ -1.73
PRP40YKL012W MGA1P53050 456 aa4.25□□□□□ -1.73
PRP40YKL012W ALG13P53178 202 aa4.25□□□□□ -1.73
PRP40YKL012W YBL112CQ3E7Y4 105 aa4.25□□□□□ -1.73
PRP40YKL012W MATALPHA2P0CY08 210 aa4.24□□□□□ -1.73
PRP40YKL012W HMLALPHA2P0CY09 210 aa4.24□□□□□ -1.73
PRP40YKL012W MER1P16523 270 aa4.24□□□□□ -1.73
PRP40YKL012W TRR2P38816 342 aa4.24□□□□□ -1.73
PRP40YKL012W YMR144WP40214 342 aaKnown RBP4.24□□□□□ -1.73
PRP40YKL012W SNZ1Q03148 297 aa4.24□□□□□ -1.73
PRP40YKL012W GOT1Q03554 138 aa4.24□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 28.4 ms