RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CENPTQ96BT3 561 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ZBTB10Q96DT7 871 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 SAAL1Q96ER3 474 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 MFSD3Q96ES6 412 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ERO1AQ96HE7 468 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 GPATCH3Q96I76 525 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 CDK5RAP3Q96JB5 506 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 CCDC114Q96M63 670 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 GPR101Q96P66 508 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 OSBPL9Q96SU4 736 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RBM15Q96T37 977 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS35-208ENST00000568612 ELF4Q99607 663 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 FOXB1Q99853 325 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 TARS2Q9BW92 718 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 TRIM4Q9C037 500 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ZDHHC5Q9C0B5 715 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 KIF9Q9HAQ2 790 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 BATF3Q9NR55 127 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 OXSMQ9NWU1 459 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 TUBA8Q9NY65 449 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 UBAP1Q9NZ09 502 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 DKK3Q9UBP4 350 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ITGB1BP2Q9UKP3 347 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 G3BP2Q9UN86 482 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 NCOA1Q15788 1441 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 GAPVD1Q14C86 1478 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 TMEM221A6NGB7 291 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 GOLGA6L10A6NI86 522 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 EIF3FO00303 357 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 ERC2O15083 957 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 CHUKO15111 745 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 GPR42O15529 346 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ERLIN2O94905 339 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 PRLP01236 227 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ADRB1P08588 477 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 VIL1P09327 827 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 PNMA6AP0CW24 399 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 ATP2A2P16615 1042 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 TRIM21P19474 475 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 CLK1P49759 484 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 SCNN1BP51168 640 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 NEK2P51955 445 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 KPNA1P52294 538 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 CLNS1AP54105 237 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 IL2P60568 153 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 CTAG1AP78358 180 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ROR2Q01974 943 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 WASHC5Q12768 1159 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 EFEMP1Q12805 493 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SNX1Q13596 522 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 BTG3Q14201 252 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 CNGA3Q16281 694 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 RNF151Q2KHN1 245 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 Q4G0T1 1027 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LRRC23Q53EV4 343 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 DALRD3Q5D0E6 543 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 SPDYCQ5MJ68 293 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 C20orf194Q5TEA3 1177 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 AGAP9Q5VTM2 703 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 AGBL4Q5VU57 503 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 KANK2Q63ZY3 851 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 TIGD7Q6NT04 549 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 ATF7IPQ6VMQ6 1270 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 USP30Q70CQ3 517 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LARP4Q71RC2 724 aaKnown RBP eCLIP3.61□□□□□ -1.83
VPS35-208ENST00000568612 PCGF5Q86SE9 256 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LCA5Q86VQ0 697 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 DZIP1Q86YF9 867 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 PALM2Q8IXS6 379 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 AHI1Q8N157 1196 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 PPM1KQ8N3J5 372 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 GBP7Q8N8V2 638 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 MAB21L3Q8N8X9 362 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 CCDC150Q8NCX0 1101 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 CCDC112Q8NEF3 446 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 OR14K1Q8NGZ2 314 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 KIAA1524Q8TCG1 905 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ZFAND2BQ8WV99 257 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LEO1Q8WVC0 666 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 RTF1Q92541 710 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 GOLGA1Q92805 767 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 FOXRED1Q96CU9 486 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 NEIL1Q96FI4 390 aaPredicted RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 MAML3Q96JK9 1138 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SAMD11Q96NU1 681 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ALS2CR12Q96Q35 445 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 GSDMAQ96QA5 445 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 IWS1Q96ST2 819 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 DPYSL5Q9BPU6 564 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 STK31Q9BXU1 1019 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LRRCC1Q9C099 1032 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SLC7A5P2Q9GIP4 190 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 BRD8Q9H0E9 1235 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 MEGF9Q9H1U4 602 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 NRDE2Q9H7Z3 1164 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ATP6V0A4Q9HBG4 840 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 PDRG1Q9NUG6 133 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 COMMD8Q9NX08 183 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 KLHL42Q9P2K6 505 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SAE1Q9UBE0 346 aaPredicted RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms