RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 ACAP3Q96P50 834 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 WDR6Q9NNW5 1121 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 TOPORSQ9NS56 1045 aaPredicted RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 BLOC1S4Q9NUP1 217 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 CLIC4Q9Y696 253 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 TDRD15B5MCY1 1934 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 TOM1L1O75674 476 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 HARSP12081 509 aaKnown RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 KCNE1P15382 129 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 PLCG1P19174 1290 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 SYT1P21579 422 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 FGFR3P22607 806 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 NCKAP1LP55160 1127 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 MCM6Q14566 821 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 KARSQ15046 597 aaKnown RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 SEZ6Q53EL9 994 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 GPBP1Q86WP2 473 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 FBXL6Q8N531 539 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 C3orf58Q8NDZ4 430 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 SMG7Q92540 1137 aaKnown RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 C18orf25Q96B23 403 aaPredicted RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 SNX27Q96L92 541 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 REEP2Q9BRK0 252 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 PRKD2Q9BZL6 878 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 KCNH6Q9H252 994 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 ZDHHC7Q9NXF8 308 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 CNTN3Q9P232 1028 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 LARSQ9P2J5 1176 aaKnown RBP11.26□□□□□ -0.61
CLK3-205ENST00000561673 ANKFY1Q9P2R3 1169 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 DMDP11532 3685 aa11.26□□□□□ -0.61
CLK3-205ENST00000561673 I3L4J1 428 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 CLDN3O15551 220 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 TRAPPC3O43617 180 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 ZMYND10O75800 440 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 PDGFBP01127 241 aaPredicted RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 TKTP29401 623 aaKnown RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 MARCKSP29966 332 aaPredicted RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 DDIT3P35638 169 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 BRCC3P46736 316 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 ZNF131P52739 623 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 MCL1Q07820 350 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 NOLC1Q14978 699 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLK3-205ENST00000561673 PTPAQ15257 358 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 SPECC1Q5M775 1068 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 FAM173BQ6P4H8 233 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 PDXDC1Q6P996 788 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 RSPO2Q6UXX9 243 aaPredicted RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 ZPBP2Q6X784 338 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 USP49Q70CQ1 688 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 HAUS6Q7Z4H7 955 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 SUGP1Q8IWZ8 645 aaKnown RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 MYCT1Q8N699 235 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 RASSF8Q8NHQ8 419 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 RAD54LQ92698 747 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 KCNN1Q92952 543 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 DDX27Q96GQ7 796 aaKnown RBP11.25□□□□□ -0.61
CLK3-205ENST00000561673 EPSTI1Q96J88 318 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 HAPLN2Q9GZV7 340 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 KCNK12Q9HB15 430 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 PIDD1Q9HB75 910 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 SLC38A7Q9NVC3 462 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 FBXW11Q9UKB1 542 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 ODF2LQ9ULJ1 636 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 USP34Q70CQ2 3546 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 MYO15AQ9UKN7 3530 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 CLUHO75153 1309 aa11.25□□□□□ -0.61
CLK3-205ENST00000561673 PLXNA3P51805 1871 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 H0YCG3 227 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 PODXLO00592 558 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 GBP2P32456 591 aaPredicted RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 RPL9P32969 192 aaKnown RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 OR1D2P34982 312 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 MATR3P43243 847 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLK3-205ENST00000561673 VCPP55072 806 aaKnown RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 RESTQ13127 1097 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 TDGQ13569 410 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 RAB33AQ14088 237 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 STAMQ92783 540 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 FAM212AQ96EL1 285 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 BICD1Q96G01 975 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 INTS4Q96HW7 963 aaKnown RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 CLIC6Q96NY7 704 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 MYADMQ96S97 322 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 CCSER1Q9C0I3 900 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 PARVGQ9HBI0 331 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 MTRRQ9UBK8 725 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 FBXO2Q9UK22 296 aaPredicted RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 TBX20Q9UMR3 447 aa11.24□□□□□ -0.61
CLK3-205ENST00000561673 SRPRBQ9Y5M8 271 aaKnown RBP11.24□□□□□ -0.61
CLK3-205ENST00000561673 TRAK2O60296 914 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 FAM13AO94988 1023 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 KRT18P05783 430 aaKnown RBP11.23□□□□□ -0.61
CLK3-205ENST00000561673 C8AP07357 584 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 CXCL8P10145 99 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 AVPR2P30518 371 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 NHLH1Q02575 133 aa11.23□□□□□ -0.61
CLK3-205ENST00000561673 CEBPZQ03701 1054 aaKnown RBP11.23□□□□□ -0.61
CLK3-205ENST00000561673 AXDND1Q5T1B0 1012 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms