RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 HES2Q9Y543 173 aa6.12□□□□□ -1.43
CLSTN3-215ENST00000544584 CLIC4Q9Y696 253 aa6.12□□□□□ -1.43
CLSTN3-215ENST00000544584 ATG2AQ2TAZ0 1938 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NLRC5Q86WI3 1866 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PP2D1A8MPX8 630 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 TMEM189-UBE2V1I3L0A0 370 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PER2O15055 1255 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 OGTO15294 1046 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 MBTPS2O43462 519 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 B3GAT3O94766 335 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 IL18RAPO95256 599 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 BRD1O95696 1058 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 F13A1P00488 732 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 IDEP14735 1019 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 KCNE1P15382 129 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 CYP3A5P20815 502 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PBX3P40426 434 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ZNF131P52739 623 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NUBP1P53384 320 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NCKAP1LP55160 1127 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 SNRPFP62306 86 aaKnown RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NUCB2P80303 420 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 GTF2BQ00403 316 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DSG1Q02413 1049 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 MCL1Q07820 350 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 RESTQ13127 1097 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 CAMK1Q14012 370 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 CBX2Q14781 532 aaPredicted RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 SURF1Q15526 300 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PTPN14Q15678 1187 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 IL17AQ16552 155 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ECM1Q16610 540 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 UVSSAQ2YD98 709 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ADALQ6DHV7 355 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 LLGL2Q6P1M3 1020 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 FUT10Q6P4F1 479 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 OTOP3Q7RTS5 596 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 SPRED2Q7Z698 418 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 USP37Q86T82 979 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NT5DC4Q86YG4 428 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 SUGP1Q8IWZ8 645 aaKnown RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ELMOD1Q8N336 334 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 FBXL6Q8N531 539 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 LINC00301Q8NCQ3 95 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 BEST2Q8NFU1 509 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 BSNDQ8WZ55 320 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 POMGNT1Q8WZA1 660 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DDX12PQ92771 950 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ATOH1Q92858 354 aaPredicted RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 NXPE3Q969Y0 559 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ZFP42Q96MM3 310 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 REEP2Q9BRK0 252 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 MSTO1Q9BUK6 570 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 TARS2Q9BW92 718 aaKnown RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 RHOBTB2Q9BYZ6 727 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DNAI2Q9GZS0 605 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ST6GALNAC4Q9H4F1 302 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 PIDD1Q9HB75 910 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 KIAA1586Q9HCI6 787 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ZDHHC7Q9NXF8 308 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 CGNQ9P2M7 1197 aaKnown RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DNAJB4Q9UDY4 337 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DSEQ9UL01 958 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 UBQLN1Q9UMX0 589 aaKnown RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 USTQ9Y2C2 406 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 DERAQ9Y315 318 aa6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 ZFP37Q9Y6Q3 630 aaPredicted RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 FNDC1Q4ZHG4 1894 aaPredicted RBP6.11□□□□□ -1.43
CLSTN3-215ENST00000544584 SMIM28A0A1B0GU29 152 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 TMEM221A6NGB7 291 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 CASTOR2A6NHX0 329 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 SFI1A8K8P3 1242 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 HIDE1A8MVS5 230 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 M0R296 226 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 C2CD2LO14523 706 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 SYN3O14994 580 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 CLASP2O75122 1294 aaKnown RBP6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 PRPF40AO75400 957 aaKnown RBP6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 DDHD2O94830 711 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 GCNT3O95395 438 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 PIGRP01833 764 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 HNRNPA1P09651 372 aaKnown RBP eCLIP6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 HARSP12081 509 aaKnown RBP6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 TRIM21P19474 475 aaKnown RBP6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 DNAJB1P25685 340 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 PNPLA4P41247 253 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 OSTNP61366 133 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 SMARCB1Q12824 385 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 ACAP1Q15027 740 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 PTPAQ15257 358 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 CLUL1Q15846 466 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 PSMD5Q16401 504 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 NT5DC1Q5TFE4 455 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 FAM171A1Q5VUB5 890 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 KANK3Q6NY19 840 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 TRIM67Q6ZTA4 783 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 HS2ST1Q7LGA3 356 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 ZNF720Q7Z2F6 126 aa6.1□□□□□ -1.43
CLSTN3-215ENST00000544584 DGLUCYQ7Z3D6 616 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms