RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RASSF4Q9H2L5 321 aa14.93□□□□□ -0.02
USP3-204ENST00000540797 UBQLN1Q9UMX0 589 aaKnown RBP14.93□□□□□ -0.02
USP3-204ENST00000540797 GNL1P36915 607 aaPredicted RBP14.93□□□□□ -0.02
USP3-204ENST00000540797 MMS22LQ6ZRQ5 1243 aa14.93□□□□□ -0.02
USP3-204ENST00000540797 SRRM1Q8IYB3 904 aaKnown RBP14.93□□□□□ -0.02
USP3-204ENST00000540797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.93□□□□□ -0.02
USP3-204ENST00000540797 CDCA5Q96FF9 252 aa14.93□□□□□ -0.02
USP3-204ENST00000540797 LRGUKQ96M69 825 aa14.93□□□□□ -0.02
USP3-204ENST00000540797 ZC3H18Q86VM9 953 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 RMDN1Q96DB5 314 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 PPP1R12CQ9BZL4 782 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 CNOT10Q9H9A5 744 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 DDX4Q9NQI0 724 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 COL3A1P02461 1466 aaPredicted RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 ARHGEF28Q8N1W1 1705 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 A0A1B0GTH6 734 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 MED24O75448 989 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 KRT14P02533 472 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 SPATS2Q86XZ4 545 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 CCDC197Q8NCU1 140 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 COLEC11Q9BWP8 271 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 RIOX1Q9H6W3 641 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 STARD7Q9NQZ5 370 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 NKRFO15226 690 aaKnown RBP eCLIP14.92□□□□□ -0.026e-7■■□□□ 13.1
USP3-204ENST00000540797 PRAMEP78395 509 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 VWA5AO00534 786 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 KLRC1P26715 233 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 ATN1P54259 1190 aaPredicted RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 GRIN1Q05586 938 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 GRB10Q13322 594 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 SARS2Q9NP81 518 aaKnown RBP14.92□□□□□ -0.02
USP3-204ENST00000540797 GPRC5CQ9NQ84 441 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 HACD3Q9P035 362 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 FHOD1Q9Y613 1164 aa14.92□□□□□ -0.02
USP3-204ENST00000540797 CASQ2O14958 399 aaPredicted RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 EVI5O60447 810 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 SNX2O60749 519 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ITGB3P05106 788 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 MUTP22033 750 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ACADSBP45954 432 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ALDH1A3P47895 512 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 YWHAHQ04917 246 aaPredicted RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 KIZQ2M2Z5 673 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 DDX53Q86TM3 631 aaKnown RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 SENP7Q9BQF6 1050 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 SLC26A2P50443 739 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ST8SIA6P61647 398 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 TMEM169Q96HH4 297 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 DDX47Q9H0S4 455 aaKnown RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 UVRAGQ9P2Y5 699 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.91□□□□□ -0.02
USP3-204ENST00000540797 GRID2IPA4D2P6 1211 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 COPEO14579 308 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 P4HA2O15460 535 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 STRNO43815 780 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 BAG2O95816 211 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 SLC9A1P19634 815 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 NAMPTP43490 491 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 CCT5P48643 541 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 PPATQ06203 517 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 FKBP1CQ5VVH2 108 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 METTL7BQ6UX53 244 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 TTC30BQ8N4P2 665 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 C1orf54Q8WWF1 131 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 P2RX7Q99572 595 aaKnown RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 ABCB6Q9NP58 842 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 PCDHB2Q9Y5E7 798 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 DISP2A7MBM2 1401 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 E5RI56 91 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 KPNA6O60684 536 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ZNF189O75820 626 aaPredicted RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 CYP2C19P33261 490 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 SLC18A3Q16572 532 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ZSCAN26Q16670 478 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 Q4G0T1 1027 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 ATG16L1Q676U5 607 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 OR6P1Q8NGX9 317 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 FAM163AQ96GL9 167 aaPredicted RBP14.91□□□□□ -0.02
USP3-204ENST00000540797 PKNOX2Q96KN3 472 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 PI4K2AQ9BTU6 479 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 DPP3Q9NY33 737 aa14.91□□□□□ -0.02
USP3-204ENST00000540797 TTC4O95801 387 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 VTNP04004 478 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 GLRA4Q5JXX5 417 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 PHLDB3Q6NSJ2 640 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 AGO4Q9HCK5 861 aaKnown RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 AGPAT3Q9NRZ7 376 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 OLA1Q9NTK5 396 aaKnown RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 G3BP2Q9UN86 482 aaKnown RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 C2CD2LO14523 706 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 OGTO15294 1046 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 IRF1P10914 325 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 EIF3EP60228 445 aaKnown RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 TTC23LQ6PF05 361 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 TAS2R42Q7RTR8 314 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 MCEEQ96PE7 176 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 ASCC2Q9H1I8 757 aaPredicted RBP14.9□□□□□ -0.02
USP3-204ENST00000540797 LRRC4BQ9NT99 713 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 SH3BP1Q9Y3L3 701 aa14.9□□□□□ -0.02
USP3-204ENST00000540797 KLHL38Q2WGJ6 581 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms