RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZNF707Q96C28 371 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-214ENST00000496043 IGSF9Q9P2J2 1179 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 FAM13AO94988 1023 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 KRT18P05783 430 aaKnown RBP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 HNRNPA1P09651 372 aaKnown RBP eCLIP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 IGFBP6P24592 240 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 AVPR2P30518 371 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 OR1D2P34982 312 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 NCKAP1LP55160 1127 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 GRIN1Q05586 938 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 MCL1Q07820 350 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 TDGQ13569 410 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 RAB33AQ14088 237 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 MCM6Q14566 821 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 KARSQ15046 597 aaKnown RBP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 UVSSAQ2YD98 709 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 LIN9Q5TKA1 542 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 ANKS3Q6ZW76 656 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 RAD54LQ92698 747 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 KCNN1Q92952 543 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 BICD1Q96G01 975 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 INTS4Q96HW7 963 aaKnown RBP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 SNX27Q96L92 541 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 ZMAT2Q96NC0 199 aaKnown RBP13.93□□□□□ -0.18
PTPRF-214ENST00000496043 REEP2Q9BRK0 252 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 CCSER1Q9C0I3 900 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 PLEKHA5Q9HAU0 1116 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 KCNK12Q9HB15 430 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 GOLGA2P5Q9HBQ8 144 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 BLOC1S4Q9NUP1 217 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.93□□□□□ -0.182e-6■■■□□ 17.8
PTPRF-214ENST00000496043 CNTN3Q9P232 1028 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 ANKFY1Q9P2R3 1169 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 BACE2Q9Y5Z0 518 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 CLIC4Q9Y696 253 aa13.93□□□□□ -0.18
PTPRF-214ENST00000496043 CLUHO75153 1309 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 MYO10Q9HD67 2058 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 PODXLO00592 558 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 ADAM12O43184 909 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 TRAK2O60296 914 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 CLTAP09496 248 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 PLCG1P19174 1290 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 SYT1P21579 422 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 BRCC3P46736 316 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 SOX4Q06945 474 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-214ENST00000496043 NOLC1Q14978 699 aaKnown RBP eCLIP13.92□□□□□ -0.184e-9■■□□□ 13.3
PTPRF-214ENST00000496043 KYAT1Q16773 422 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 SLC10A6Q3KNW5 377 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 SEZ6Q53EL9 994 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 PPM1LQ5SGD2 360 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 IER5LQ5T953 404 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 RTL10Q7L3V2 364 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 NXPE3Q969Y0 559 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 ZHX3Q9H4I2 956 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 PARVGQ9HBI0 331 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 EPS15L1Q9UBC2 864 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 MTRRQ9UBK8 725 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 CCDC39Q9UFE4 941 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 FBXW11Q9UKB1 542 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 TBX20Q9UMR3 447 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 NUB1Q9Y5A7 615 aa13.92□□□□□ -0.18
PTPRF-214ENST00000496043 SRPRBQ9Y5M8 271 aaKnown RBP13.92□□□□□ -0.18
PTPRF-214ENST00000496043 N4BP1O75113 896 aaKnown RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 XYLBO75191 536 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 C8AP07357 584 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 TKTP29401 623 aaKnown RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 MARCKSP29966 332 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 HOXD11P31277 338 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 ABCD1P33897 745 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 LIG4P49917 911 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 ZNF131P52739 623 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 PTPAQ15257 358 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 AXDND1Q5T1B0 1012 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 KRI1Q8N9T8 703 aaKnown RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 C3orf58Q8NDZ4 430 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 LARP4BQ92615 738 aaKnown RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 C18orf25Q96B23 403 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-214ENST00000496043 EPSTI1Q96J88 318 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 MYADMQ96S97 322 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 SMOC2Q9H3U7 446 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 CDY1Q9Y6F8 540 aa13.91□□□□□ -0.18
PTPRF-214ENST00000496043 H7C4K7 107 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 I3L4J1 428 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 SYN3O14994 580 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 TBCAO75347 108 aaKnown RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 PDGFBP01127 241 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 LAMP2P13473 410 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 FSHRP23945 695 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 HOXA9P31269 272 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 NUBP1P53384 320 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 PTPN5P54829 565 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 NHLH1Q02575 133 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 CEBPZQ03701 1054 aaKnown RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 RESTQ13127 1097 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 SPECC1Q5M775 1068 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 RRAGBQ5VZM2 374 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 GRASPQ7Z6J2 395 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 LRRC15Q8TF66 581 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 TSPAN18Q96SJ8 248 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 MFSD1Q9H3U5 465 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms