RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PROZP22891 400 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 IGFBP6P24592 240 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 LONP1P36776 959 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 CLCNKBP51801 687 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 ELAVL2Q12926 359 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 TDGQ13569 410 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 PSMD5Q16401 504 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 ARSHQ5FYA8 562 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 CWF19L1Q69YN2 538 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 FLCNQ8NFG4 579 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 PIK3R5Q8WYR1 880 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 SNX27Q96L92 541 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 ACAP3Q96P50 834 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 NTPCRQ9BSD7 190 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 KCNK12Q9HB15 430 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 DAXXQ9UER7 740 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 CLIC4Q9Y696 253 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 ANK1P16157 1881 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 SMIM28A0A1B0GU29 152 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 PROB1E7EW31 1015 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 ABLIM1O14639 778 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 FAM13AO94988 1023 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 NPR3P17342 541 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 MATR3P43243 847 aaKnown RBP eCLIP17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 CLCN5P51795 746 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 MCM6Q14566 821 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 NOLC1Q14978 699 aaKnown RBP eCLIP17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 SEZ6Q53EL9 994 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 ASCL5Q7RTU5 278 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 LNX1Q8TBB1 728 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 SMG7Q92540 1137 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 BICD1Q96G01 975 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 UROC1Q96N76 676 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 REEP2Q9BRK0 252 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 PLEKHA4Q9H4M7 779 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 PIDD1Q9HB75 910 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 BLOC1S4Q9NUP1 217 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 LARSQ9P2J5 1176 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 KCNG1Q9UIX4 513 aa17.2■□□□□ 0.34
CCDC88B-205ENST00000472524 TMEM189-UBE2V1I3L0A0 370 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 I3L4J1 428 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 PI15O43692 258 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 NARSO43776 548 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 TOM1L1O75674 476 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 KRT18P05783 430 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 SYT1P21579 422 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 MARCKSP29966 332 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 NCKAP1LP55160 1127 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 SOX4Q06945 474 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 RESTQ13127 1097 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 UPP1Q16831 310 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 SPECC1Q5M775 1068 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 FAM173BQ6P4H8 233 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 LILRA6Q6PI73 481 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 DCLRE1AQ6PJP8 1040 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 ALKAL1Q6UXT8 129 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 C3orf58Q8NDZ4 430 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 HDAC7Q8WUI4 952 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 RSAD2Q8WXG1 361 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 RAD54LQ92698 747 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 ZMAT2Q96NC0 199 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 CLSTN3Q9BQT9 956 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 ZHX3Q9H4I2 956 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 ODF2LQ9ULJ1 636 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 DUSP12Q9UNI6 340 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 CLUHO75153 1309 aa17.19■□□□□ 0.34
CCDC88B-205ENST00000472524 H0YCG3 227 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 K7ENM7 598 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 ADAM12O43184 909 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 TKTP29401 623 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 GBP2P32456 591 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 NBL1P41271 181 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 BRCC3P46736 316 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 CEBPZQ03701 1054 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 XKR4Q5GH76 650 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 PDXDC1Q6P996 788 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 ZPBP2Q6X784 338 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 HAUS6Q7Z4H7 955 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 SIX5Q8N196 739 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 MYCT1Q8N699 235 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 ZNF707Q96C28 371 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 WDR6Q9NNW5 1121 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 SLC38A7Q9NVC3 462 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 ZDHHC7Q9NXF8 308 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 CNTN3Q9P232 1028 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 FBXW11Q9UKB1 542 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 FBXL21Q9UKT6 434 aa17.18■□□□□ 0.34
CCDC88B-205ENST00000472524 K7ELQ4 463 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 PODXLO00592 558 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 CLDN3O15551 220 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 MEFVO15553 781 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 C1RP00736 705 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 KCNE1P15382 129 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 FGFR3P22607 806 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 MCL1Q07820 350 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 PTPAQ15257 358 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 LIN9Q5TKA1 542 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 CD300LGQ6UXG3 332 aa17.17■□□□□ 0.34
CCDC88B-205ENST00000472524 CYP26C1Q6V0L0 522 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms