RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 KIAA0100Q14667 2235 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 RECQL4O94761 1208 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 HLA-DRAP01903 254 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 COL6A1P12109 1028 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 SKIP12755 728 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 UCHL3P15374 230 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 MNX1P50219 401 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 WNT7BP56706 349 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 TLE2Q04725 743 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 LRMPQ12912 555 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 ZACNQ401N2 412 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 C1orf53Q5VUE5 145 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 TDRD10Q5VZ19 366 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 JADE1Q6IE81 842 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 FMNL3Q8IVF7 1028 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 TAS1R2Q8TE23 839 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 KIF12Q96FN5 646 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 PAWRQ96IZ0 340 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 FAM81BQ96LP2 452 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 BAG1Q99933 345 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 NAA15Q9BXJ9 866 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 IFIH1Q9BYX4 1025 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 GANQ9H2C0 597 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 HIPK3Q9H422 1215 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 FAM105AQ9NUU6 356 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 COQ4Q9Y3A0 265 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 HES2Q9Y543 173 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 PCDHB2Q9Y5E7 798 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 PTPRJQ12913 1337 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 EPHB6O15197 1021 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 XPOTO43592 962 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 ZC3H11AO75152 810 aaKnown RBP eCLIP18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 C4BPAP04003 597 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 ITGA4P13612 1032 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 IBSPP21815 317 aaPredicted RBP18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 SLC10A6Q3KNW5 377 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 UBXN11Q5T124 520 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 OR5B17Q8NGF7 314 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 ZNF516Q92618 1163 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 SNX27Q96L92 541 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 FBXL5Q9UKA1 691 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 DERAQ9Y315 318 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 C2CD2Q9Y426 696 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 FHOD1Q9Y613 1164 aa18.48■□□□□ 0.55
CCDC28B-202ENST00000421922 TRIP11Q15643 1979 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 NOL4O94818 638 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 PARNO95453 639 aaKnown RBP18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 NFICP08651 508 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 KRT19P08727 400 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 SKILP12757 684 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 APBA1Q02410 837 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 NCOA4Q13772 614 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 SFMBT2Q5VUG0 894 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 PDXDC1Q6P996 788 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 C15orf39Q6ZRI6 1047 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 TRAPPC11Q7Z392 1133 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 EFCAB13Q8IY85 973 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 PPM1KQ8N3J5 372 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 PGBD4Q96DM1 585 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 RPS6KC1Q96S38 1066 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 ADAM2Q99965 735 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 FTHL17Q9BXU8 183 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 SIX2Q9NPC8 291 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 DNAJC12Q9UKB3 198 aa18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 PDCD11Q14690 1871 aaKnown RBP18.47■□□□□ 0.55
CCDC28B-202ENST00000421922 LRRC53A6NM62 1247 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 AKAP5P24588 427 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 MSNP26038 577 aaKnown RBP18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 MFAP3P55082 362 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 IQCEQ6IPM2 695 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 BEST2Q8NFU1 509 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 SEPT8Q92599 483 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 TSPAN18Q96SJ8 248 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 DNAJC7Q99615 494 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 PPP1R12CQ9BZL4 782 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 KCNF1Q9H3M0 494 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 UBE2TQ9NPD8 197 aaPredicted RBP18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.46■□□□□ 0.557e-11■■■■■ 260.8
CCDC28B-202ENST00000421922 TMEM39AQ9NV64 488 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 MYO6Q9UM54 1294 aa18.46■□□□□ 0.55
CCDC28B-202ENST00000421922 CLTBP09497 229 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 STAT1P42224 750 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 ASIC2Q16515 512 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 ARHGAP44Q17R89 818 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 TRAF7Q6Q0C0 670 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 CYP26C1Q6V0L0 522 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 TMTC1Q8IUR5 882 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 RNF169Q8NCN4 708 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 SMG8Q8ND04 991 aaKnown RBP18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 LMO3Q8TAP4 145 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 SEMA4DQ92854 862 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 FAM84AQ96KN4 292 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 KLK14Q9P0G3 267 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 CNTN3Q9P232 1028 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 ITGA11Q9UKX5 1188 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 ZKSCAN5Q9Y2L8 839 aa18.45■□□□□ 0.54
CCDC28B-202ENST00000421922 RNF225M0QZC1 329 aaPredicted RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 ARHGAP6O43182 974 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 CCDC172P0C7W6 258 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms