RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 TBC1D4O60343 1298 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 NUP62P37198 522 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 USP39Q53GS9 565 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 ALKBH5Q6P6C2 394 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 HAUS6Q7Z4H7 955 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 STKLD1Q8NE28 680 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 EXD1Q8NHP7 514 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 NDST4Q9H3R1 872 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 MYO3AQ8NEV4 1616 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 COL15A1P39059 1388 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 SYNGAP1Q96PV0 1343 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 NDUFS3O75489 264 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 PDHA1P08559 390 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 CCNE1P24864 410 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 PDIA2Q13087 525 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 GPS1Q13098 491 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 VN1R5Q7Z5H4 357 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 USP33Q8TEY7 942 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 NUP85Q9BW27 656 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 EXOSC4Q9NPD3 245 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 SAMSN1Q9NSI8 373 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 A0A087WUV0 522 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 CTSHP09668 335 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 GPC5P78333 572 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 PGBD4Q96DM1 585 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 C17orf80Q9BSJ5 609 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 TDRD3Q9H7E2 651 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 MRFAP1Q9Y605 127 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 TEX28O15482 410 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 DYRK3O43781 588 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ARFIP2P53365 341 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ZBED6P86452 979 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 RUNX1T1Q06455 604 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 SHROOM1Q2M3G4 852 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ARHGAP17Q68EM7 881 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 IYDQ6PHW0 289 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 RFX8Q6ZV50 586 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 KCNV2Q8TDN2 545 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 SH3RF3Q8TEJ3 882 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ZNF512Q96ME7 567 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ANTXR1Q9H6X2 564 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 DDX56Q9NY93 547 aaKnown RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 NOP53Q9NZM5 478 aaKnown RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 PKD2L2Q9NZM6 624 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 MPP6Q9NZW5 540 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 SLC9A2Q9UBY0 812 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 DEAF1O75398 565 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ADRA2BP18089 450 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 NCKAP1LP55160 1127 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 NR1H3Q13133 447 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 DPCR1Q3MIW9 517 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 C11orf57Q6ZUT1 292 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ZBED8Q8IZ13 594 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 JADE3Q92613 823 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 APOL5Q9BWW9 433 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 RNF146Q9NTX7 359 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 GABBR1Q9UBS5 961 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 RASSF9O75901 435 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ALOX15P16050 662 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 COPB2P35606 906 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 LRRC63Q05C16 580 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 SLC39A14Q15043 492 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 E2F4Q16254 413 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 GJC2Q5T442 439 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 LUZP2Q86TE4 346 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 CLEC4FQ8N1N0 589 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 BRIP1Q9BX63 1249 aa10.71□□□□□ -0.69
CLIP1-202ENST00000358808 LSG1Q9H089 658 aaKnown RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ASCC2Q9H1I8 757 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-202ENST00000358808 ADGRA2Q96PE1 1338 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 IQGAP1P46940 1657 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 USP31Q70CQ4 1352 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 hCG_2014768A0A024R1R8 64 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 PMS2P54278 862 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 GPSM2P81274 684 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 CAV1Q03135 178 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 AP3B2Q13367 1082 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 RARS2Q5T160 578 aaKnown RBP10.71□□□□□ -0.7
CLIP1-202ENST00000358808 RCSD1Q6JBY9 416 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 XXYLT1Q8NBI6 393 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF280CQ8ND82 737 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 USP6NLQ92738 828 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 TNIP3Q96KP6 325 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 BRD8Q9H0E9 1235 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 RPS6KB2Q9UBS0 482 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 SPACA6W5XKT8 324 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 MMP1P03956 469 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 CHGBP05060 677 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 SOX11P35716 441 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 TRIM32Q13049 653 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 CYTH1Q15438 398 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 PTRHD1Q6GMV3 140 aaKnown RBP10.71□□□□□ -0.7
CLIP1-202ENST00000358808 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.71□□□□□ -0.7
CLIP1-202ENST00000358808 TTC39CQ8N584 583 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 ATPAF2Q8N5M1 289 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF564Q8TBZ8 553 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-202ENST00000358808 CEP95Q96GE4 821 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 TBC1D22BQ9NU19 505 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms