RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 PTPN21Q16825 1174 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ZNF568Q3ZCX4 644 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 FAM26DQ5JW98 314 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 UBXN11Q5T124 520 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ZNF658Q5TYW1 1059 aaPredicted RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ZNF720Q7Z2F6 126 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ZNF410Q86VK4 478 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 GAS2L3Q86XJ1 694 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 MAP4K3Q8IVH8 894 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 MYOCDQ8IZQ8 938 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ADSSL1Q8N142 457 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 AOPEPQ8N6M6 819 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 RNF169Q8NCN4 708 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 DBF4BQ8NFT6 615 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 SYAP1Q96A49 352 aaPredicted RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 TIPINQ9BVW5 301 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 GCOM2Q9BZD3 368 aaPredicted RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 CDT1Q9H211 546 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 NXF3Q9H4D5 531 aaKnown RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 SUV39H2Q9H5I1 410 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 OLFML3Q9NRN5 406 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 TOPORSQ9NS56 1045 aaPredicted RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 KCND2Q9NZV8 630 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 LARSQ9P2J5 1176 aaKnown RBP7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 CACNG4Q9UBN1 327 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 TBX20Q9UMR3 447 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 ST3GAL5Q9UNP4 418 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 HES2Q9Y543 173 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 COL4A6Q14031 1691 aa7.11□□□□□ -1.27
DEPDC4-201ENST00000299185 TET1Q8NFU7 2136 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 COL6A3P12111 3177 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PTPRSQ13332 1948 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 HNRNPDLO14979 420 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 RPS6KA5O75582 802 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ERLIN2O94905 339 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 RAG1P15918 1043 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ATF7P17544 494 aaPredicted RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PTMSP20962 102 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 EIF4BP23588 611 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ADSSP30520 456 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 HOXA11P31270 313 aaPredicted RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 MATR3P43243 847 aaKnown RBP eCLIP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 CASP4P49662 377 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 LIG4P49917 911 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 GUCY2FP51841 1108 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 CRYBB1P53674 252 aaPredicted RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 DEFB103AP81534 67 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 GTF2BQ00403 316 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 SPAG1Q07617 926 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 BFSP2Q13515 415 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PRPF4BQ13523 1007 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 DSC3Q14574 896 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 MXD4Q14582 209 aaPredicted RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 BMT2Q1RMZ1 405 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ZCWPW2Q504Y3 356 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ATF7IP2Q5U623 682 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 C1orf53Q5VUE5 145 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 LMBRD2Q68DH5 695 aaPredicted RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 SCARA3Q6AZY7 606 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 FAM117BQ6P1L5 589 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 LRRC55Q6ZSA7 311 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 TSHZ1Q6ZSZ6 1077 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 CYP2U1Q7Z449 544 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 RSPH3Q86UC2 560 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 THNSL1Q8IYQ7 743 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 SYCP3Q8IZU3 236 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 CAGE1Q8TC20 777 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PLEKHO2Q8TD55 490 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 DPF3Q92784 378 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 CCDC47Q96A33 483 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ELMO3Q96BJ8 720 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 TOX2Q96NM4 488 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 GSDMAQ96QA5 445 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 ACCSQ96QU6 501 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 DUSP9Q99956 384 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 LRRC27Q9C0I9 530 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 C2orf40Q9H1Z8 148 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 KCTD10Q9H3F6 313 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PRDM6Q9NQX0 595 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 AGPAT3Q9NRZ7 376 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 AGPAT5Q9NUQ2 364 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 RMND1Q9NWS8 449 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 SEL1LQ9UBV2 794 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 HOOK1Q9UJC3 728 aaKnown RBP7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 PADI3Q9ULW8 664 aa7.1□□□□□ -1.27
DEPDC4-201ENST00000299185 UBE4BO95155 1302 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 EIF3DO15371 548 aaKnown RBP eCLIP7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 B4GALT3O60512 393 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 TIMP1P01033 207 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 NR3C1P04150 777 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 MYL1P05976 194 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 THBS1P07996 1170 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 TRIM49P0CI25 452 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 TRIM49CP0CI26 452 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 SFPQP23246 707 aaKnown RBP eCLIP7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 MAGEA10P43363 369 aaPredicted RBP7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 SMTNP53814 917 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 STRN3Q13033 797 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 PAK1Q13153 545 aa7.09□□□□□ -1.27
DEPDC4-201ENST00000299185 MAPK6Q16659 721 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms