RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
DEPDC4-201ENST00000299185 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
DEPDC4-201ENST00000299185 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
DEPDC4-201ENST00000299185 PHF23Q9BUL5 403 aaPredicted RBP19.72■□□□□ 0.75
DEPDC4-201ENST00000299185 FOXD1Q16676 465 aa18.68■□□□□ 0.58
DEPDC4-201ENST00000299185 POTEDQ86YR6 584 aa17.83■□□□□ 0.44
DEPDC4-201ENST00000299185 MSH5O43196 834 aa17.74■□□□□ 0.43
DEPDC4-201ENST00000299185 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
DEPDC4-201ENST00000299185 PLPPR3Q6T4P5 718 aa17.37■□□□□ 0.37
DEPDC4-201ENST00000299185 PPP6R1Q9UPN7 881 aa17.14■□□□□ 0.33
DEPDC4-201ENST00000299185 ADRA2BP18089 450 aa17.09■□□□□ 0.33
DEPDC4-201ENST00000299185 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
DEPDC4-201ENST00000299185 SCAF1Q9H7N4 1312 aaKnown RBP15.81■□□□□ 0.12
DEPDC4-201ENST00000299185 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
DEPDC4-201ENST00000299185 NISCHQ9Y2I1 1504 aa15.44■□□□□ 0.06
DEPDC4-201ENST00000299185 CACNB1Q02641 598 aaPredicted RBP15.41■□□□□ 0.06
DEPDC4-201ENST00000299185 DCAF8L1A6NGE4 600 aa15.21■□□□□ 0.03
DEPDC4-201ENST00000299185 PPP4R3CPQ6ZMV5 832 aa15.13■□□□□ 0.01
DEPDC4-201ENST00000299185 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
DEPDC4-201ENST00000299185 RNF39Q9H2S5 420 aa15.04■□□□□ -0
DEPDC4-201ENST00000299185 CNKSR2Q8WXI2 1034 aa14.98□□□□□ -0.01
DEPDC4-201ENST00000299185 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
DEPDC4-201ENST00000299185 C1QBPQ07021 282 aaKnown RBP14.87□□□□□ -0.03
DEPDC4-201ENST00000299185 DNAJC5BQ9UF47 199 aa14.76□□□□□ -0.05
DEPDC4-201ENST00000299185 NCBP3Q53F19 620 aaKnown RBP14.54□□□□□ -0.08
DEPDC4-201ENST00000299185 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.43□□□□□ -0.1
DEPDC4-201ENST00000299185 NPM3O75607 178 aaKnown RBP14.2□□□□□ -0.14
DEPDC4-201ENST00000299185 U3KPZ7 1027 aaPredicted RBP14.02□□□□□ -0.17
DEPDC4-201ENST00000299185 CAPN15O75808 1086 aa13.97□□□□□ -0.17
DEPDC4-201ENST00000299185 DSG3P32926 999 aa13.95□□□□□ -0.18
DEPDC4-201ENST00000299185 POTEHQ6S545 545 aa13.93□□□□□ -0.18
DEPDC4-201ENST00000299185 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
DEPDC4-201ENST00000299185 APLP2Q06481 763 aa13.77□□□□□ -0.21
DEPDC4-201ENST00000299185 ZNF219Q9P2Y4 722 aaPredicted RBP13.66□□□□□ -0.22
DEPDC4-201ENST00000299185 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.65□□□□□ -0.22
DEPDC4-201ENST00000299185 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
DEPDC4-201ENST00000299185 KCNA4P22459 653 aa13.64□□□□□ -0.23
DEPDC4-201ENST00000299185 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
DEPDC4-201ENST00000299185 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
DEPDC4-201ENST00000299185 CCDC180Q9P1Z9 1646 aa13.61□□□□□ -0.23
DEPDC4-201ENST00000299185 ABCB7O75027 752 aa13.55□□□□□ -0.24
DEPDC4-201ENST00000299185 SAMD1Q6SPF0 538 aaPredicted RBP13.51□□□□□ -0.25
DEPDC4-201ENST00000299185 RBM42Q9BTD8 480 aaKnown RBP13.43□□□□□ -0.26
DEPDC4-201ENST00000299185 MYCNP04198 464 aaPredicted RBP13.21□□□□□ -0.29
DEPDC4-201ENST00000299185 ABCC9O60706 1549 aa13.21□□□□□ -0.29
DEPDC4-201ENST00000299185 POLA2Q14181 598 aa13.2□□□□□ -0.3
DEPDC4-201ENST00000299185 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
DEPDC4-201ENST00000299185 ZBTB12Q9Y330 459 aaPredicted RBP13.01□□□□□ -0.33
DEPDC4-201ENST00000299185 AKT1S1Q96B36 256 aa13□□□□□ -0.33
DEPDC4-201ENST00000299185 ZCCHC6Q5VYS8 1495 aaKnown RBP12.95□□□□□ -0.34
DEPDC4-201ENST00000299185 SP7Q8TDD2 431 aaPredicted RBP12.9□□□□□ -0.34
DEPDC4-201ENST00000299185 ATF5Q9Y2D1 282 aaPredicted RBP12.88□□□□□ -0.35
DEPDC4-201ENST00000299185 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
DEPDC4-201ENST00000299185 REM2Q8IYK8 340 aaPredicted RBP12.83□□□□□ -0.36
DEPDC4-201ENST00000299185 DCAF8L2P0C7V8 631 aa12.82□□□□□ -0.36
DEPDC4-201ENST00000299185 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
DEPDC4-201ENST00000299185 PIP4P2Q8N4L2 257 aa12.78□□□□□ -0.36
DEPDC4-201ENST00000299185 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
DEPDC4-201ENST00000299185 DCAF1Q9Y4B6 1507 aa12.7□□□□□ -0.38
DEPDC4-201ENST00000299185 NACADO15069 1562 aa12.69□□□□□ -0.38
DEPDC4-201ENST00000299185 HAX1O00165 279 aa12.69□□□□□ -0.38
DEPDC4-201ENST00000299185 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
DEPDC4-201ENST00000299185 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
DEPDC4-201ENST00000299185 FXR2P51116 673 aaKnown RBP eCLIP12.66□□□□□ -0.38
DEPDC4-201ENST00000299185 MYO15BQ96JP2 1530 aa12.62□□□□□ -0.39
DEPDC4-201ENST00000299185 SCRIBQ14160 1630 aa12.58□□□□□ -0.4
DEPDC4-201ENST00000299185 ATXN8OSP0DMR3 200 aa12.56□□□□□ -0.4
DEPDC4-201ENST00000299185 SPDYE2BA6NHP3 402 aa12.53□□□□□ -0.4
DEPDC4-201ENST00000299185 ZBTB22O15209 634 aa12.53□□□□□ -0.4
DEPDC4-201ENST00000299185 SPDYE6P0CI01 402 aa12.53□□□□□ -0.4
DEPDC4-201ENST00000299185 SPDYE2Q495Y8 402 aa12.53□□□□□ -0.4
DEPDC4-201ENST00000299185 SHROOM4Q9ULL8 1493 aa12.51□□□□□ -0.41
DEPDC4-201ENST00000299185 FBLN2P98095 1184 aa12.5□□□□□ -0.41
DEPDC4-201ENST00000299185 UNC13AQ9UPW8 1703 aa12.49□□□□□ -0.41
DEPDC4-201ENST00000299185 SPDYE1Q8NFV5 336 aaPredicted RBP12.4□□□□□ -0.42
DEPDC4-201ENST00000299185 EVX2Q03828 476 aa12.39□□□□□ -0.43
DEPDC4-201ENST00000299185 BICRAQ9NZM4 1560 aa12.39□□□□□ -0.43
DEPDC4-201ENST00000299185 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
DEPDC4-201ENST00000299185 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
DEPDC4-201ENST00000299185 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
DEPDC4-201ENST00000299185 ZNF692Q9BU19 519 aaPredicted RBP12.29□□□□□ -0.44
DEPDC4-201ENST00000299185 C19orf67A6NJJ6 358 aa12.27□□□□□ -0.45
DEPDC4-201ENST00000299185 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
DEPDC4-201ENST00000299185 MKRN4PQ13434 485 aaPredicted RBP12.24□□□□□ -0.45
DEPDC4-201ENST00000299185 DNAJC5Q9H3Z4 198 aa12.19□□□□□ -0.46
DEPDC4-201ENST00000299185 GABBR2O75899 941 aa12.16□□□□□ -0.46
DEPDC4-201ENST00000299185 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
DEPDC4-201ENST00000299185 LHX8Q68G74 356 aa12.1□□□□□ -0.47
DEPDC4-201ENST00000299185 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
DEPDC4-201ENST00000299185 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
DEPDC4-201ENST00000299185 CLCN6P51797 869 aa12.02□□□□□ -0.49
DEPDC4-201ENST00000299185 EIF4G1Q04637 1599 aaKnown RBP12.01□□□□□ -0.49
DEPDC4-201ENST00000299185 MROH2BQ7Z745 1585 aa11.98□□□□□ -0.49
DEPDC4-201ENST00000299185 SMARCA4P51532 1647 aa11.97□□□□□ -0.49
DEPDC4-201ENST00000299185 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-201ENST00000299185 FARP1Q9Y4F1 1045 aaPredicted RBP11.95□□□□□ -0.5
DEPDC4-201ENST00000299185 BAZ1AQ9NRL2 1556 aaPredicted RBP11.92□□□□□ -0.5
DEPDC4-201ENST00000299185 CC2D2AQ9P2K1 1620 aa11.92□□□□□ -0.5
DEPDC4-201ENST00000299185 RSF1Q96T23 1441 aaPredicted RBP11.87□□□□□ -0.51
DEPDC4-201ENST00000299185 WIZO95785 1651 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms