RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 VTI1BQ9UEU0 232 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 DOCK3Q8IZD9 2030 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SUPT3HO75486 399 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PTGS2P35354 604 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGEF6Q15052 776 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF568Q3ZCX4 644 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 WAPLQ7Z5K2 1190 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CENPTQ96BT3 561 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 A0A0G2JPF8 293 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGEF35A5YM69 484 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TCP11X1B4DZS4 312 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HNRNPCL3B7ZW38 293 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CCNT1O60563 726 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HNRNPCL4P0DMR1 293 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SLC1A1P43005 524 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RPS6KA3P51812 740 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 EIF5AP63241 154 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SLC39A14Q15043 492 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SPOPLQ6IQ16 392 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF473Q8WTR7 871 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NCLNQ969V3 563 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TSSK1BQ9BXA7 367 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SPRTNQ9H040 489 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TMEM206Q9H813 350 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TNCP24821 2201 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MTSS1O43312 755 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SEC31AO94979 1220 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RAPGEF3O95398 923 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CCNA2P20248 432 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC85BQ15834 202 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HIF1AQ16665 826 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HERC4Q5GLZ8 1057 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 BBS2Q9BXC9 721 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 STK33Q9BYT3 514 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MYOFQ9NZM1 2061 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MFN2O95140 757 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RTN3O95197 1032 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 YWHABP31946 246 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGEF19Q8IW93 802 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 C15orf40Q8WUR7 153 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 DEPDC1BQ8WUY9 529 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM54Q9BYV2 358 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 FAM207AQ9NSI2 230 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHA12Q9UN75 941 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NOVA2Q9UNW9 492 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 AK5Q9Y6K8 562 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RNF113AO15541 343 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 GCNT3O95395 438 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ANXA6P08133 673 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CDH6P55285 790 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TOP3AQ13472 1001 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ABRAXAS1Q6UWZ7 409 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CLEC4FQ8N1N0 589 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RORBQ92753 470 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 C9orf16Q9BUW7 83 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SELENONQ9NZV5 590 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RAPGEFL1Q9UHV5 662 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHGB4Q9UN71 923 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PPME1Q9Y570 386 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHGA3Q9Y5H0 932 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 LAMA4Q16363 1823 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PCDH11XQ9BZA7 1347 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 CHP2O43745 196 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ITGA10O75578 1167 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 BRAFP15056 766 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NR4A1P22736 598 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NLRP6P59044 892 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TTC30BQ8N4P2 665 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ERLEC1Q96DZ1 483 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 C12orf66Q96MD2 445 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MTA3Q9BTC8 594 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 EHD3Q9NZN3 535 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MED23Q9ULK4 1368 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 KIAA0232Q92628 1395 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MEI4A8MW99 385 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NQO1P15559 274 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF18P17022 549 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RPL5P46777 297 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TRIP10Q15642 601 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 KRT24Q2M2I5 525 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NAA35Q5VZE5 725 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TXNDC11Q6PKC3 985 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RRM2BQ7LG56 351 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HAUS6Q7Z4H7 955 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MND1Q9BWT6 205 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SLC40A1Q9NP59 571 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 USE1Q9NZ43 259 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM10Q9UDY6 481 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ADGRL3Q9HAR2 1447 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ECE2O60344 883 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 ATP2B4P23634 1241 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 TDGQ13569 410 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 TAS2R42Q7RTR8 314 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 TMEM110Q86TL2 294 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 ABHD8Q96I13 439 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 RUBCNLQ9H714 662 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 L2HGDHQ9H9P8 463 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 JMJD4Q9H9V9 463 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 RPRD1BQ9NQG5 326 aaKnown RBP5.07□□□□□ -1.6
CSMD3-201ENST00000297405 ABHD10Q9NUJ1 306 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms