RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	YDR209C	Q03480	137 aa		3.89	□□□□□ -1.79
RRP40	YOL142W	ARV1	Q06541	321 aa		3.89	□□□□□ -1.79
RRP40	YOL142W	MDM36	Q06820	579 aa		3.89	□□□□□ -1.79
RRP40	YOL142W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.89	□□□□□ -1.79	not detected
RRP40	YOL142W	JID1	Q12350	301 aa		3.89	□□□□□ -1.79
RRP40	YOL142W	YOS9	Q99220	542 aa		3.89	□□□□□ -1.79
RRP40	YOL142W	MSI1	P13712	422 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	EXG1	P23776	448 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	CYS4	P32582	507 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	GDH2	P33327	1092 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	NSG1	P38837	291 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	MIG3	P39943	394 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	YFR054C	P43622	192 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	RPE1	P46969	238 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	NUP57	P48837	541 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	MPC1	P53157	130 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	DBP6	P53734	629 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	TPS1	Q00764	495 aa	Known RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	URC2	Q04411	772 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	NFI1	Q12216	726 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	YGK3	Q12222	375 aa	Predicted RBP	3.88	□□□□□ -1.79
RRP40	YOL142W	YOR214C	Q12282	236 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	YOR032W-A	Q8TGS1	66 aa		3.88	□□□□□ -1.79
RRP40	YOL142W	RHO1	P06780	209 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	RPC40	P07703	335 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	YOL163W	P0CF20	169 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	CAP2	P13517	287 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	FBA1	P14540	359 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	PET9	P18239	318 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	GRR1	P24814	1151 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	UBC8	P28263	218 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	MRPL6	P32904	214 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	NUF2	P33895	451 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	MED8	P38304	223 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	AST2	P39945	430 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	SPO73	P40031	143 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	YNL208W	P40159	199 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	EMC2	P47133	292 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	PGU1	P47180	361 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	LSG1	P53145	640 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	PRM8	P53174	237 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	KRE28	Q04431	385 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	SEC13	Q04491	297 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	DCR2	Q05924	578 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	DTD1	Q07648	150 aa	Known RBP	3.87	□□□□□ -1.79
RRP40	YOL142W	VIK1	Q12045	647 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	AEP3	Q12089	606 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	MDM32	Q12171	622 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	ISA2	Q12425	185 aa		3.87	□□□□□ -1.79
RRP40	YOL142W	ARF1	P11076	181 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	ERD1	P16151	362 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	ITR2	P30606	609 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	ECM8	P38246	354 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	RTC2	P38279	296 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	PEX18	P38855	283 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	YER079W	P40052	210 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	COG3	P40094	801 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	FAR7	P43592	221 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	SUR7	P54003	302 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	YMR099C	Q03161	297 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	CGI121	Q03705	181 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	YLR446W	Q06204	433 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	NDL1	Q06568	189 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	LOT6	Q07923	191 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	BRX1	Q08235	291 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	YLR126C	Q12288	251 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	YPL119C-A	Q3E751	87 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	RIB3	Q99258	208 aa		3.86	□□□□□ -1.79
RRP40	YOL142W	DET1	Q99288	334 aa	Known RBP	3.86	□□□□□ -1.79
RRP40	YOL142W	CAR2	P07991	424 aa	Known RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	ERD2	P18414	219 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	SCO1	P23833	295 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	RRP7	P25368	297 aa	Predicted RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	TIM12	P32830	109 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	3.85	□□□□□ -1.79	not detected
RRP40	YOL142W	PTI1	P39927	425 aa	Predicted RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	THO1	P40040	218 aa	Known RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	PHB1	P40961	287 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	GCN20	P43535	752 aa	Known RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	ECO1	P43605	281 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	YFR057W	P43625	151 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	LCB3	P47013	409 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	BAT2	P47176	376 aa	Known RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	YGL235W	P53071	178 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	MCP1	Q12106	302 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	YRA1	Q12159	226 aa	Known RBP	3.85	□□□□□ -1.79
RRP40	YOL142W	FLO9	P39712	1322 aa		3.85	□□□□□ -1.79
RRP40	YOL142W	IPP1	P00817	287 aa	Known RBP	3.84	□□□□□ -1.79
RRP40	YOL142W	YOL162W	P0CF19	215 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	DPM1	P14020	267 aa	Known RBP	3.84	□□□□□ -1.79
RRP40	YOL142W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.79	not detected
RRP40	YOL142W	YPK2	P18961	677 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	ASF2	P32448	525 aa	Predicted RBP	3.84	□□□□□ -1.79
RRP40	YOL142W	TPO5	P36029	618 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	YRB2	P40517	327 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	DFG10	P40526	253 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	MST27	P53176	234 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	YGR168C	P53293	376 aa		3.84	□□□□□ -1.79
RRP40	YOL142W	MPP6	P53725	186 aa	Predicted RBP	3.84	□□□□□ -1.79
RRP40	YOL142W	COS1	P53822	381 aa		3.84	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 68.2 ms