RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	ARO3	P14843	370 aa	Known RBP	9.29	□□□□□ -0.92
VPS60	YDR486C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	9.29	□□□□□ -0.92	RIP-Chip
VPS60	YDR486C	SOL3	P38858	249 aa		9.29	□□□□□ -0.92
VPS60	YDR486C	AVT4	P50944	713 aa		9.29	□□□□□ -0.92
VPS60	YDR486C	MTL1	P53214	551 aa		9.29	□□□□□ -0.92
VPS60	YDR486C	SRL2	Q12020	392 aa		9.29	□□□□□ -0.92
VPS60	YDR486C	USB1	Q12208	290 aa	Known RBP	9.29	□□□□□ -0.92
VPS60	YDR486C	HTZ1	Q12692	134 aa	Known RBP	9.29	□□□□□ -0.92
VPS60	YDR486C	DEG1	P31115	442 aa	Known RBP	9.28	□□□□□ -0.92
VPS60	YDR486C	TCM62	P38228	572 aa	Known RBP	9.28	□□□□□ -0.92
VPS60	YDR486C	FLX1	P40464	311 aa		9.28	□□□□□ -0.92
VPS60	YDR486C	OST1	P41543	476 aa	Known RBP	9.28	□□□□□ -0.92
VPS60	YDR486C	OTU1	P43558	301 aa		9.28	□□□□□ -0.92
VPS60	YDR486C	YIP5	P53108	310 aa		9.28	□□□□□ -0.92
VPS60	YDR486C	NCE102	Q12207	173 aa	RIP-Chip data	9.28	□□□□□ -0.92	not detected
VPS60	YDR486C	RPL3	P14126	387 aa	Known RBP	9.27	□□□□□ -0.93
VPS60	YDR486C	CLB6	P32943	380 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	MCH2	P36032	473 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	YND1	P40009	630 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	TOK1	P40310	691 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	AVT7	P40501	490 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	AIM25	P47140	327 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	NSA1	P53136	463 aa	Predicted RBP	9.27	□□□□□ -0.93
VPS60	YDR486C	ACS1	Q01574	713 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	YPL077C	Q02831	240 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	UTP15	Q04305	513 aa	Known RBP	9.27	□□□□□ -0.93
VPS60	YDR486C	HNT1	Q04344	158 aa	Known RBP	9.27	□□□□□ -0.93
VPS60	YDR486C	MRL1	Q06815	381 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	ENV7	Q12003	364 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	RNH203	Q12338	110 aa		9.27	□□□□□ -0.93
VPS60	YDR486C	CDC39	P25655	2108 aa	Known RBP	9.26	□□□□□ -0.93
VPS60	YDR486C	MSI1	P13712	422 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	URA6	P15700	204 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	RNP1	P32385	249 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	GLC7	P32598	312 aa	Known RBP	9.26	□□□□□ -0.93
VPS60	YDR486C	REC114	P32841	428 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	PIG2	P40187	538 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	TY1A-MR1	Q04215	440 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	YLR031W	Q07978	186 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	RFU1	Q08003	200 aa		9.26	□□□□□ -0.93
VPS60	YDR486C	SPS2	P08459	502 aa		9.25	□□□□□ -0.93
VPS60	YDR486C	SSA3	P09435	649 aa	Known RBP	9.25	□□□□□ -0.93
VPS60	YDR486C	YCP4	P25349	247 aa	Known RBP	9.25	□□□□□ -0.93
VPS60	YDR486C	YBL010C	P32788	280 aa		9.25	□□□□□ -0.93
VPS60	YDR486C	ARC40	P38328	384 aa	Known RBP	9.25	□□□□□ -0.93
VPS60	YDR486C	YBR242W	P38331	238 aa		9.25	□□□□□ -0.93
VPS60	YDR486C	SPR28	Q04921	423 aa		9.25	□□□□□ -0.93
VPS60	YDR486C	MRX9	Q07349	420 aa	Known RBP	9.25	□□□□□ -0.93
VPS60	YDR486C	RRS1	Q08746	203 aa	Known RBP	9.25	□□□□□ -0.93
VPS60	YDR486C	TRA1	P38811	3744 aa		9.25	□□□□□ -0.93
VPS60	YDR486C	CDC28	P00546	298 aa	Known RBP	9.24	□□□□□ -0.93
VPS60	YDR486C	BUD23	P25627	275 aa	Predicted RBP	9.24	□□□□□ -0.93
VPS60	YDR486C	VMA5	P31412	392 aa	Known RBP	9.24	□□□□□ -0.93
VPS60	YDR486C	MSS1	P32559	526 aa	Predicted RBP	9.24	□□□□□ -0.93
VPS60	YDR486C	TY1A-DR2	Q03964	440 aa	Known RBP	9.24	□□□□□ -0.93
VPS60	YDR486C	ERP4	Q12450	207 aa		9.24	□□□□□ -0.93
VPS60	YDR486C	HUT1	Q12520	339 aa		9.24	□□□□□ -0.93
VPS60	YDR486C	MET3	P08536	511 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	GCD1	P09032	578 aa	Predicted RBP	9.23	□□□□□ -0.93
VPS60	YDR486C	SAG1	P20840	650 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	ATG22	P25568	528 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	ACH1	P32316	526 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	VAM7	P32912	316 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	YKL063C	P35725	167 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	MRPL36	P36531	177 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	YBR220C	P38318	560 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	ARO9	P38840	513 aa	Predicted RBP	9.23	□□□□□ -0.93
VPS60	YDR486C	UBC13	P52490	153 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	TYW3	P53177	273 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	YNL092W	P53934	400 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	MRPL13	Q02204	264 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	DLT1	Q04216	342 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	YPR196W	Q06595	470 aa		9.23	□□□□□ -0.93
VPS60	YDR486C	TDH2	P00358	332 aa	Known RBP	9.22	□□□□□ -0.93
VPS60	YDR486C	CDC34	P14682	295 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	CDC23	P16522	626 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	RNA14	P25298	677 aa	Known RBP	9.22	□□□□□ -0.93
VPS60	YDR486C	RFA3	P26755	122 aa	Known RBP	9.22	□□□□□ -0.93
VPS60	YDR486C	MRPL3	P36516	390 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	YGP1	P38616	354 aa	Known RBP	9.22	□□□□□ -0.93
VPS60	YDR486C	UFD1	P53044	361 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	MRPS16	Q02608	121 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	RSC58	Q07979	502 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	WTM2	Q12206	467 aa		9.22	□□□□□ -0.93
VPS60	YDR486C	RAD52	P06778	471 aa	Known RBP	9.21	□□□□□ -0.94
VPS60	YDR486C	AGA2	P32781	87 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	YMR144W	P40214	342 aa	Known RBP	9.21	□□□□□ -0.94
VPS60	YDR486C	YIL029C	P40538	142 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	SSN8	P47821	323 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	DIE2	P50076	525 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	YPR098C	Q06089	161 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	SCM3	Q12334	223 aa		9.21	□□□□□ -0.94
VPS60	YDR486C	RPL43A	P0CX25	92 aa	Known RBP	9.2	□□□□□ -0.94
VPS60	YDR486C	RPL43B	P0CX26	92 aa		9.2	□□□□□ -0.94
VPS60	YDR486C	NHP6B	P11633	99 aa	Known RBP	9.2	□□□□□ -0.94
VPS60	YDR486C	HNM1	P19807	563 aa		9.2	□□□□□ -0.94
VPS60	YDR486C	RFA1	P22336	621 aa	Known RBP	9.2	□□□□□ -0.94
VPS60	YDR486C	MRPL27	P36526	146 aa	Predicted RBP	9.2	□□□□□ -0.94
VPS60	YDR486C	FAT1	P38225	669 aa		9.2	□□□□□ -0.94
VPS60	YDR486C	BOL3	P39724	118 aa		9.2	□□□□□ -0.94

Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms