RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 C1orf220Q5T0J3 134 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 KRT39Q6A163 491 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 UBE2Q1Q7Z7E8 422 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 TMEM192Q8IY95 271 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 SPC24Q8NBT2 197 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 SEPT8Q92599 483 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 OSBPL7Q9BZF2 842 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 TMX1Q9H3N1 280 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 NXF3Q9H4D5 531 aaKnown RBP18.27■□□□□ 0.52
SNX1-203ENST00000558040 SNTG2Q9NY99 539 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 IPPQ9Y573 584 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 PCDHB2Q9Y5E7 798 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 NBNO60934 754 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 RFC2P35250 354 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 CBWD6Q4V339 395 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 CBWD3Q5JTY5 395 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 CBWD5Q5RIA9 395 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 NT5DC4Q86YG4 428 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 TSPAN18Q96SJ8 248 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 POP1Q99575 1024 aaKnown RBP18.26■□□□□ 0.51
SNX1-203ENST00000558040 ADAM2Q99965 735 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 NUP58Q9BVL2 599 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 TMEM117Q9H0C3 514 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 GCNT4Q9P109 453 aa18.26■□□□□ 0.51
SNX1-203ENST00000558040 KIAA0100Q14667 2235 aaKnown RBP18.26■□□□□ 0.51
SNX1-203ENST00000558040 UMODL1Q5DID0 1318 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 TTC26A0AVF1 554 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 LACTBL1A8MY62 500 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 RECQL4O94761 1208 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 TNNC2P02585 160 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 PTMAP06454 111 aaKnown RBP18.25■□□□□ 0.51
SNX1-203ENST00000558040 TMEM191BP0C7N4 346 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 CYP2C18P33260 490 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 CCL23P55773 120 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 WNT7BP56706 349 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 DUOXA2Q1HG44 320 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 SLC10A6Q3KNW5 377 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 PLEKHG4Q58EX7 1191 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 PPFIBP1Q86W92 1011 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 SMG8Q8ND04 991 aaKnown RBP18.25■□□□□ 0.51
SNX1-203ENST00000558040 CACTINQ8WUQ7 758 aaKnown RBP18.25■□□□□ 0.51
SNX1-203ENST00000558040 PGBD4Q96DM1 585 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 ANKRD36BP1Q96IX9 119 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 SNX27Q96L92 541 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 APOL6Q9BWW8 343 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 WNT8AQ9H1J5 351 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 PRDM5Q9NQX1 630 aaPredicted RBP18.25■□□□□ 0.51
SNX1-203ENST00000558040 C1orf112Q9NSG2 853 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 PARP2Q9UGN5 583 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 SIK3Q9Y2K2 1263 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 DERAQ9Y315 318 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 HES2Q9Y543 173 aa18.25■□□□□ 0.51
SNX1-203ENST00000558040 A0A0U1RQF3 1178 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 KIAA0355O15063 1070 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 MGEA5O60502 916 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 ZNF623O75123 536 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 CXCL10P02778 98 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 ITGA4P13612 1032 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 TRIM21P19474 475 aaKnown RBP18.24■□□□□ 0.51
SNX1-203ENST00000558040 GSDMDP57764 484 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 TFAMQ00059 246 aaKnown RBP18.24■□□□□ 0.51
SNX1-203ENST00000558040 BIRC3Q13489 604 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 TMEM132DQ14C87 1099 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 PTPN21Q16825 1174 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 SV2AQ7L0J3 742 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 FBXL13Q8NEE6 735 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 NEK11Q8NG66 645 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 SCLYQ96I15 445 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 CRACR2AQ9BSW2 395 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 LSM14BQ9BX40 385 aaKnown RBP18.24■□□□□ 0.51
SNX1-203ENST00000558040 RGS18Q9NS28 235 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 C2CD2Q9Y426 696 aa18.24■□□□□ 0.51
SNX1-203ENST00000558040 RALGAPA2Q2PPJ7 1873 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 PHACTR2O75167 634 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 TIMP1P01033 207 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 C4BPAP04003 597 aaKnown RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 AKAP5P24588 427 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 DEKP35659 375 aaKnown RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 KCNMA1Q12791 1236 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 ZACNQ401N2 412 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 EPC2Q52LR7 807 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 FIGNQ5HY92 759 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 LMBRD2Q68DH5 695 aaPredicted RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 JADE1Q6IE81 842 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 C15orf39Q6ZRI6 1047 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 SLC24A5Q71RS6 500 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 MRPL10Q7Z7H8 261 aaKnown RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 DBF4BQ8NFT6 615 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 ZNF516Q92618 1163 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 INTS2Q9H0H0 1204 aaKnown RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 TSPYL2Q9H2G4 693 aaPredicted RBP18.23■□□□□ 0.51
SNX1-203ENST00000558040 UBN1Q9NPG3 1134 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 PLCB1Q9NQ66 1216 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 CNTN3Q9P232 1028 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 GIT1Q9Y2X7 761 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 COQ4Q9Y3A0 265 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 DAAM1Q9Y4D1 1078 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 PTPRJQ12913 1337 aa18.23■□□□□ 0.51
SNX1-203ENST00000558040 XPOTO43592 962 aaKnown RBP18.22■□□□□ 0.51
SNX1-203ENST00000558040 NFICP08651 508 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms