RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 K7ENM7 598 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 MEFVO15553 781 aaPredicted RBP16.2■□□□□ 0.18
USP28-204ENST00000537642 TRAK2O60296 914 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 TADA2AO75478 443 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 KIF4AO95239 1232 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 F13A1P00488 732 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 HARSP12081 509 aaKnown RBP16.2■□□□□ 0.18
USP28-204ENST00000537642 PDIA4P13667 645 aaKnown RBP16.2■□□□□ 0.18
USP28-204ENST00000537642 GLUD2P49448 558 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 DSG1Q02413 1049 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 NOLC1Q14978 699 aaKnown RBP eCLIP16.2■□□□□ 0.18
USP28-204ENST00000537642 XKR4Q5GH76 650 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 HASPINQ8TF76 798 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 HAPLN2Q9GZV7 340 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 ZHX3Q9H4I2 956 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 EPHX3Q9H6B9 360 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 ANKFY1Q9P2R3 1169 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 SSX2IPQ9Y2D8 614 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 PDCD11Q14690 1871 aaKnown RBP16.2■□□□□ 0.18
USP28-204ENST00000537642 VWA8A3KMH1 1905 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 SMIM28A0A1B0GU29 152 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 MYMKA6NI61 221 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 SPTLC2O15270 562 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 PPP6R2O75170 966 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 TBCAO75347 108 aaKnown RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 YEATS4O95619 227 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 KLRC2P26717 231 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 CLCN4P51793 760 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 YARSP54577 528 aaKnown RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 MCL1Q07820 350 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 USP41Q3LFD5 358 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 TPRNQ4KMQ1 711 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 SEZ6Q53EL9 994 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 CCDC73Q6ZRK6 1079 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 DYMQ7RTS9 669 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 PPFIBP1Q86W92 1011 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 C12orf76Q8N812 135 aaPredicted RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 SNX27Q96L92 541 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 ZMAT2Q96NC0 199 aaKnown RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 ACAP3Q96P50 834 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 POP1Q99575 1024 aaKnown RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 PANK2Q9BZ23 570 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 RXFP1Q9HBX9 757 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 TOPORSQ9NS56 1045 aaPredicted RBP16.19■□□□□ 0.18
USP28-204ENST00000537642 DZANK1Q9NVP4 752 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 CDH22Q9UJ99 828 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 TBX20Q9UMR3 447 aa16.19■□□□□ 0.18
USP28-204ENST00000537642 TEX28O15482 410 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 CLDN3O15551 220 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 PIGRP01833 764 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 SCP2P22307 547 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 IGFBP6P24592 240 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 NMT1P30419 496 aaKnown RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 SOX4Q06945 474 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 CBX2Q14781 532 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 FOXD4L6Q3SYB3 417 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 KIAA1841Q6NSI8 718 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 KANK3Q6NY19 840 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 FOXD4L3Q6VB84 417 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 SV2BQ7L1I2 683 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 DDX12PQ92771 950 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 DNAJC19Q96DA6 116 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 BICD1Q96G01 975 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 PHF7Q9BWX1 381 aaPredicted RBP16.18■□□□□ 0.18
USP28-204ENST00000537642 ADAM7Q9H2U9 754 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 GOLGA2P5Q9HBQ8 144 aa16.18■□□□□ 0.18
USP28-204ENST00000537642 SF3B1O75533 1304 aaKnown RBP eCLIP16.18■□□□□ 0.188e-6■■■■■ 107
USP28-204ENST00000537642 MTCL1Q9Y4B5 1905 aaKnown RBP16.17■□□□□ 0.18
USP28-204ENST00000537642 LOC730098B7Z3J9 87 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 PI4K2BG5E9Z4 385 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 KCNE1P15382 129 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 STAT6P42226 847 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 LIG4P49917 911 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 CLCNKBP51801 687 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 GTF2BQ00403 316 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 ITIH3Q06033 890 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 UPP1Q16831 310 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 SLC10A6Q3KNW5 377 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 RTP2Q5QGT7 225 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 RARS2Q5T160 578 aaKnown RBP16.17■□□□□ 0.18
USP28-204ENST00000537642 CD300LGQ6UXG3 332 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 SFR1Q86XK3 245 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 GPR65Q8IYL9 337 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 PDILTQ8N807 584 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 FEZF2Q8TBJ5 459 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 RIN2Q8WYP3 895 aaPredicted RBP16.17■□□□□ 0.18
USP28-204ENST00000537642 FBXL18Q96ME1 805 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 CNTN3Q9P232 1028 aa16.17■□□□□ 0.18
USP28-204ENST00000537642 TMEM189-UBE2V1I3L0A0 370 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 HNRNPDLO14979 420 aaKnown RBP16.16■□□□□ 0.18
USP28-204ENST00000537642 CUTAO60888 179 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 ADH1AP07327 375 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 WEE2P0C1S8 567 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 MATR3P43243 847 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP28-204ENST00000537642 ZC2HC1CQ53FD0 456 aaPredicted RBP16.16■□□□□ 0.18
USP28-204ENST00000537642 FAM171A1Q5VUB5 890 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 CES5AQ6NT32 575 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 SLC39A4Q6P5W5 647 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 DCLRE1AQ6PJP8 1040 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 SHC4Q6S5L8 630 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms