RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 ARFIP2P53365 341 aa14.65□□□□□ -0.06
SYNPO-205ENST00000522122 SUGP1Q8IWZ8 645 aaKnown RBP14.65□□□□□ -0.06
SYNPO-205ENST00000522122 AP5M1Q9H0R1 490 aa14.65□□□□□ -0.06
SYNPO-205ENST00000522122 POLR3FQ9H1D9 316 aaPredicted RBP14.65□□□□□ -0.06
SYNPO-205ENST00000522122 ZNF302Q9NR11 478 aa14.65□□□□□ -0.06
SYNPO-205ENST00000522122 DDX56Q9NY93 547 aaKnown RBP14.65□□□□□ -0.06
SYNPO-205ENST00000522122 NYAP2Q9P242 653 aa14.65□□□□□ -0.06
SYNPO-205ENST00000522122 ARFGEF2Q9Y6D5 1785 aa14.65□□□□□ -0.06
SYNPO-205ENST00000522122 FECHP22830 423 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 PPP4CP60510 307 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 ESRRGP62508 458 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 Q3C1V9 767 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SPOUT1Q5T280 376 aaKnown RBP14.64□□□□□ -0.07
SYNPO-205ENST00000522122 ATP6V1E2Q96A05 226 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SENP1Q9P0U3 644 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 ZHX2Q9Y6X8 837 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 KLRK1P26718 216 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SDC4P31431 198 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 GPC3P51654 580 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 CATSPER4Q7RTX7 472 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 HDAC7Q8WUI4 952 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 FAM96AQ9H5X1 160 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 PARVAQ9NVD7 372 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SIK3Q9Y2K2 1263 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 TNS2Q63HR2 1409 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 TRPA1O75762 1119 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 FDX1P10109 184 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 NPEPPSP55786 919 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SATB1Q01826 763 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 TNFAIP2Q03169 654 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 HIPK4Q8NE63 616 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 PRMT1Q99873 361 aaKnown RBP14.64□□□□□ -0.07
SYNPO-205ENST00000522122 HSPBP1Q9NZL4 362 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 A0A087X0T9 212 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 PHF20L1A8MW92 1017 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SPAG7O75391 227 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 FAM228BP0C875 321 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 MYBP10242 640 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 TAF1BQ53T94 588 aaPredicted RBP14.64□□□□□ -0.07
SYNPO-205ENST00000522122 MIIPQ5JXC2 388 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 MTMR8Q96EF0 704 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 VPS39Q96JC1 886 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 SLC12A6Q9UHW9 1150 aa14.64□□□□□ -0.07
SYNPO-205ENST00000522122 PDE2AO00408 941 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 RPA1P27694 616 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 YWHABP31946 246 aaKnown RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 ARSEP51690 589 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 BCAR1P56945 870 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 KRT80Q6KB66 452 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 DDX42Q86XP3 938 aaKnown RBP eCLIP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 CDH16O75309 829 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 CDR2Q01850 454 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 SYDE1Q6ZW31 735 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 TRMT10CQ7L0Y3 403 aaKnown RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 TIPINQ9BVW5 301 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 TLR10Q9BXR5 811 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 KLHL8Q9P2G9 620 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 A0A0A6YYK5 440 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 EIF3DO15371 548 aaKnown RBP eCLIP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 ITPK1Q13572 414 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 TTMPQ5BVD1 217 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 ZC3H18Q86VM9 953 aaKnown RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 HAUS8Q9BT25 410 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 JMJD4Q9H9V9 463 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 KCND2Q9NZV8 630 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 N4BP2Q86UW6 1770 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 TCP11X1B4DZS4 312 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 PHKA2P46019 1235 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 C4orf50Q6ZRC1 276 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 SMIM5Q71RC9 77 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 JAMLQ86YT9 394 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 MKNK1Q9BUB5 465 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 PACSIN1Q9BY11 444 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 MRPL4Q9BYD3 311 aaKnown RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 FAM49AQ9H0Q0 323 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 C2orf40Q9H1Z8 148 aa14.63□□□□□ -0.07
SYNPO-205ENST00000522122 CPSF3Q9UKF6 684 aaKnown RBP14.63□□□□□ -0.07
SYNPO-205ENST00000522122 BCL9O00512 1426 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 LPXNO60711 386 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 ITIH2P19823 946 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 DUOXA2Q1HG44 320 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 SPATA21Q7Z572 469 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 ARL2BPQ9Y2Y0 163 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 FUT2Q10981 343 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 CYFIP1Q7L576 1253 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 MARCH10Q8NA82 808 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-205ENST00000522122 SLC30A5Q8TAD4 765 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 TOPORSQ9NS56 1045 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-205ENST00000522122 ANGPTL3Q9Y5C1 460 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 S100BP04271 92 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-205ENST00000522122 MX2P20592 715 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 AP3M2P53677 418 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 TAP1Q03518 808 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 COBLL1Q53SF7 1204 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 MYLK4Q86YV6 388 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-205ENST00000522122 CD302Q8IX05 232 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 KCTD17Q8N5Z5 321 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 TSEN2Q8NCE0 465 aaKnown RBP14.62□□□□□ -0.07
SYNPO-205ENST00000522122 WRNIP1Q96S55 665 aa14.62□□□□□ -0.07
SYNPO-205ENST00000522122 SH2D3AQ9BRG2 576 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms