RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 MYMKA6NI61 221 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 C19orf67A6NJJ6 358 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 H0YCG3 227 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 K7ENM7 598 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 TRAK2O60296 914 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 TBCAO75347 108 aaKnown RBP23.18■■□□□ 1.3
LIME1-207ENST00000489212 URODP06132 367 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 PDIA4P13667 645 aaKnown RBP23.18■■□□□ 1.3
LIME1-207ENST00000489212 IGFBP6P24592 240 aaPredicted RBP23.18■■□□□ 1.3
LIME1-207ENST00000489212 XKR4Q5GH76 650 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 TMEM87AQ8NBN3 555 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 HASPINQ8TF76 798 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 CHST7Q9NS84 486 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 TBX20Q9UMR3 447 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 CITO14578 2027 aa23.18■■□□□ 1.3
LIME1-207ENST00000489212 SMIM28A0A1B0GU29 152 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 PPP6R2O75170 966 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 KIF4AO95239 1232 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 YEATS4O95619 227 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 NMT1P30419 496 aaKnown RBP23.17■■□□□ 1.3
LIME1-207ENST00000489212 SSTR3P32745 418 aaPredicted RBP23.17■■□□□ 1.3
LIME1-207ENST00000489212 GLUD2P49448 558 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 DSG1Q02413 1049 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 NOLC1Q14978 699 aaKnown RBP eCLIP23.17■■□□□ 1.3
LIME1-207ENST00000489212 SEZ6Q53EL9 994 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 DYMQ7RTS9 669 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 ZMAT2Q96NC0 199 aaKnown RBP23.17■■□□□ 1.3
LIME1-207ENST00000489212 CDH22Q9UJ99 828 aa23.17■■□□□ 1.3
LIME1-207ENST00000489212 TADA2AO75478 443 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 HOXB8P17481 243 aaPredicted RBP23.16■■□□□ 1.3
LIME1-207ENST00000489212 YARSP54577 528 aaKnown RBP23.16■■□□□ 1.3
LIME1-207ENST00000489212 MCL1Q07820 350 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 CCDC73Q6ZRK6 1079 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 SV2BQ7L1I2 683 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 DDX12PQ92771 950 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 DNAJC19Q96DA6 116 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 SNX27Q96L92 541 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 ACAP3Q96P50 834 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 EMILIN2Q9BXX0 1053 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 GOLGA2P5Q9HBQ8 144 aa23.16■■□□□ 1.3
LIME1-207ENST00000489212 TOPORSQ9NS56 1045 aaPredicted RBP23.16■■□□□ 1.3
LIME1-207ENST00000489212 TEX28O15482 410 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 KLRC2P26717 231 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 STAT6P42226 847 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 CLCN4P51793 760 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 GTF2BQ00403 316 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 SOX4Q06945 474 aaPredicted RBP23.15■■□□□ 1.3
LIME1-207ENST00000489212 KANK3Q6NY19 840 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 PDILTQ8N807 584 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 C12orf76Q8N812 135 aaPredicted RBP23.15■■□□□ 1.3
LIME1-207ENST00000489212 FEZF2Q8TBJ5 459 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 BICD1Q96G01 975 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 RXFP1Q9HBX9 757 aa23.15■■□□□ 1.3
LIME1-207ENST00000489212 PLXNA3P51805 1871 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 CLDN3O15551 220 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 PIGRP01833 764 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 CLCNKBP51801 687 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 SLC10A6Q3KNW5 377 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 USP41Q3LFD5 358 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 ZC2HC1CQ53FD0 456 aaPredicted RBP23.14■■□□□ 1.29
LIME1-207ENST00000489212 AXDND1Q5T1B0 1012 aaPredicted RBP23.14■■□□□ 1.29
LIME1-207ENST00000489212 KIAA1841Q6NSI8 718 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 CD300LGQ6UXG3 332 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 PPFIBP1Q86W92 1011 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 SFR1Q86XK3 245 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 EPHX3Q9H6B9 360 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 CNTN3Q9P232 1028 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 SSX2IPQ9Y2D8 614 aa23.14■■□□□ 1.29
LIME1-207ENST00000489212 SF3B1O75533 1304 aaKnown RBP eCLIP23.13■■□□□ 1.29
LIME1-207ENST00000489212 CUTAO60888 179 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 KCNE1P15382 129 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 SCP2P22307 547 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 LIG4P49917 911 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 TPRNQ4KMQ1 711 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 RTP2Q5QGT7 225 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 SLC39A4Q6P5W5 647 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 SHC4Q6S5L8 630 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 RIN2Q8WYP3 895 aaPredicted RBP23.13■■□□□ 1.29
LIME1-207ENST00000489212 ADAM7Q9H2U9 754 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 ST6GALNAC4Q9H4F1 302 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 DZANK1Q9NVP4 752 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 ZDHHC9Q9Y397 364 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 VWA8A3KMH1 1905 aa23.13■■□□□ 1.29
LIME1-207ENST00000489212 PDCD11Q14690 1871 aaKnown RBP23.13■■□□□ 1.29
LIME1-207ENST00000489212 HNRNPDLO14979 420 aaKnown RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 FAM189A1O60320 539 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 MATR3P43243 847 aaKnown RBP eCLIP23.12■■□□□ 1.29
LIME1-207ENST00000489212 DNM1Q05193 864 aaKnown RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 CBX2Q14781 532 aaPredicted RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 E2F4Q16254 413 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 UPP1Q16831 310 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 ZBTB41Q5SVQ8 909 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 RARS2Q5T160 578 aaKnown RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 ZNF720Q7Z2F6 126 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 MAP4K3Q8IVH8 894 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 C3orf58Q8NDZ4 430 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 C18orf25Q96B23 403 aaPredicted RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 FBXL18Q96ME1 805 aa23.12■■□□□ 1.29
LIME1-207ENST00000489212 POP1Q99575 1024 aaKnown RBP23.12■■□□□ 1.29
LIME1-207ENST00000489212 PHF7Q9BWX1 381 aaPredicted RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 792.2 ms