RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 MRPL11Q9Y3B7 192 aaKnown RBP11.4□□□□□ -0.58
CHD3-208ENST00000470531 HEY1Q9Y5J3 304 aa11.4□□□□□ -0.58
CHD3-208ENST00000470531 ANKRD63C9JTQ0 380 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 TRAPPC3O43617 180 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ATP5DP30049 168 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 PDIA2Q13087 525 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 FYB2Q5VWT5 728 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ZNF662Q6ZS27 426 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 LDHDQ86WU2 507 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ATP8B4Q8TF62 1192 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ATXN7L3BQ96GX2 97 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 PRMT6Q96LA8 375 aaPredicted RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 RBM15Q96T37 977 aaKnown RBP eCLIP11.39□□□□□ -0.59
CHD3-208ENST00000470531 RMDN3Q96TC7 470 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 MTFR1LQ9H019 292 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 GLT8D2Q9H1C3 349 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 SMYD3Q9H7B4 428 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 CNOT10Q9H9A5 744 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 GABBR1Q9UBS5 961 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 INPP5FQ9Y2H2 1132 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 CHD4Q14839 1912 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 EME2A4GXA9 379 aaPredicted RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 H7C0C1 242 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 TLR3O15455 904 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 RARAP10276 462 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 GAP43P17677 238 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ATP5OP48047 213 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 PPP3CAQ08209 521 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 RHOT2Q8IXI1 618 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 PDCD7Q8N8D1 485 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 TTC1Q99614 292 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 GLIS2Q9BZE0 524 aaPredicted RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 GANQ9H2C0 597 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 UNC45AQ9H3U1 944 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 SLCO1B3Q9NPD5 702 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 COL1A1P02452 1464 aaPredicted RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 SYNGAP1Q96PV0 1343 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 NID2Q14112 1375 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 CCDC189A1A4V9 331 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 HSPA9P38646 679 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 ARSEP51690 589 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 EIF3BP55884 814 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 CYP4A22Q5TCH4 519 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 IL31Q6EBC2 164 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 SPATA21Q7Z572 469 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 CCDC110Q8TBZ0 833 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 OSBPL1AQ9BXW6 950 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 UBN1Q9NPG3 1134 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 ZNF277Q9NRM2 450 aaPredicted RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 AIPL1Q9NZN9 384 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 PCDHGC5Q9Y5F6 944 aa11.39□□□□□ -0.59
CHD3-208ENST00000470531 DDX60Q8IY21 1712 aaKnown RBP11.39□□□□□ -0.59
CHD3-208ENST00000470531 ECE2O60344 883 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SLMAPQ14BN4 828 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 EPHA7Q15375 998 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 EDRF1Q3B7T1 1238 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 C6orf89Q6UWU4 347 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 TMEM179Q6ZVK1 233 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SEPT12Q8IYM1 358 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 PIH1D1Q9NWS0 290 aaKnown RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 SEPT10Q9P0V9 454 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 NFIBO00712 420 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 WEE2P0C1S8 567 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 CHKAP35790 457 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SLC12A3P55017 1021 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 CDK17Q00537 523 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 ITIH3Q06033 890 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SNRNP35Q16560 246 aaKnown RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 PPP6R3Q5H9R7 873 aaPredicted RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 LRRC37BQ96QE4 947 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 COA1Q9GZY4 146 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SUCLA2Q9P2R7 463 aaPredicted RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 KIF1AQ12756 1690 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SLITRK3O94933 977 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 CBX6O95503 412 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 CHRNA3P32297 505 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 PPP4CP60510 307 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 ARHGEF18Q6ZSZ5 1173 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 RFX6Q8HWS3 928 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 DCLK2Q8N568 766 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 C7orf31Q8N865 590 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 PYROXD1Q8WU10 500 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 FAM20AQ96MK3 541 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 FAM210AQ96ND0 272 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 RUNDC3BQ96NL0 473 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 NUDCD1Q96RS6 583 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 MKNK1Q9BUB5 465 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 EDEM3Q9BZQ6 932 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 KCTD10Q9H3F6 313 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 SLC12A6Q9UHW9 1150 aa11.38□□□□□ -0.59
CHD3-208ENST00000470531 USP15Q9Y4E8 981 aaPredicted RBP11.38□□□□□ -0.59
CHD3-208ENST00000470531 INO80B-WBP1J3KQ70 363 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 PHF2O75151 1096 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 GBP1P32455 592 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 COILP38432 576 aaPredicted RBP11.37□□□□□ -0.59
CHD3-208ENST00000470531 KDSRQ06136 332 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 TRAF1Q13077 416 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 TMCO4Q5TGY1 634 aa11.37□□□□□ -0.59
CHD3-208ENST00000470531 CC2D2BQ6DHV5 1058 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms