RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 POMKQ9H5K3 350 aa19.58■□□□□ 0.72
MSH6-207ENST00000456246 SLC38A7Q9NVC3 462 aa19.58■□□□□ 0.72
MSH6-207ENST00000456246 USTQ9Y2C2 406 aa19.58■□□□□ 0.72
MSH6-207ENST00000456246 ARIH1Q9Y4X5 557 aaPredicted RBP19.58■□□□□ 0.72
MSH6-207ENST00000456246 KIF4AO95239 1232 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 PDIA4P13667 645 aaKnown RBP19.57■□□□□ 0.72
MSH6-207ENST00000456246 TXLNAP40222 546 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 NCKAP1LP55160 1127 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 NOLC1Q14978 699 aaKnown RBP eCLIP19.57■□□□□ 0.72
MSH6-207ENST00000456246 PTPAQ15257 358 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 ARSHQ5FYA8 562 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 XKR4Q5GH76 650 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 C12orf76Q8N812 135 aaPredicted RBP19.57■□□□□ 0.72
MSH6-207ENST00000456246 RIN2Q8WYP3 895 aaPredicted RBP19.57■□□□□ 0.72
MSH6-207ENST00000456246 SNX21Q969T3 373 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 ACAP3Q96P50 834 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 REEP2Q9BRK0 252 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 PAAF1Q9BRP4 392 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 TTPALQ9BTX7 342 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 PARVGQ9HBI0 331 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 MAN1C1Q9NR34 630 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 BLOC1S4Q9NUP1 217 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 CCDC39Q9UFE4 941 aa19.57■□□□□ 0.72
MSH6-207ENST00000456246 SRPRBQ9Y5M8 271 aaKnown RBP19.57■□□□□ 0.72
MSH6-207ENST00000456246 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.57■□□□□ 0.72
MSH6-207ENST00000456246 FAM13AO94988 1023 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 ZNF131P52739 623 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 KARSQ15046 597 aaKnown RBP19.56■□□□□ 0.72
MSH6-207ENST00000456246 DCLRE1AQ6PJP8 1040 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 TMC5Q6UXY8 1006 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.56■□□□□ 0.72
MSH6-207ENST00000456246 CCDC149Q6ZUS6 474 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 PLCD3Q8N3E9 789 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 TDRD5Q8NAT2 981 aaKnown RBP19.56■□□□□ 0.72
MSH6-207ENST00000456246 PIK3R5Q8WYR1 880 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 LARP4BQ92615 738 aaKnown RBP19.56■□□□□ 0.72
MSH6-207ENST00000456246 DDX27Q96GQ7 796 aaKnown RBP19.56■□□□□ 0.72
MSH6-207ENST00000456246 SNX27Q96L92 541 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 TSHZ2Q9NRE2 1034 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 STK17AQ9UEE5 414 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 CLIC4Q9Y696 253 aa19.56■□□□□ 0.72
MSH6-207ENST00000456246 SMIM28A0A1B0GU29 152 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 CITO14578 2027 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 ABLIM1O14639 778 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 CLDN3O15551 220 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 TRAPPC3O43617 180 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 STX6O43752 255 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 TBCAO75347 108 aaKnown RBP19.55■□□□□ 0.72
MSH6-207ENST00000456246 KRT18P05783 430 aaKnown RBP19.55■□□□□ 0.72
MSH6-207ENST00000456246 KCNE1P15382 129 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 GRIN1Q05586 938 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 KYAT1Q16773 422 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 PTPN21Q16825 1174 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 GLRA4Q5JXX5 417 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 FAM171A1Q5VUB5 890 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 ALKAL1Q6UXT8 129 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 HAUS6Q7Z4H7 955 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 ZBTB33Q86T24 672 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 CEP120Q8N960 986 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 HASPINQ8TF76 798 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 RABGGTAQ92696 567 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 CNTN3Q9P232 1028 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 ANKFY1Q9P2R3 1169 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 MTMR6Q9Y217 621 aa19.55■□□□□ 0.72
MSH6-207ENST00000456246 B3GAT3O94766 335 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 PAPLNO95428 1278 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 DDIT3P35638 169 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 ZXDAP98168 799 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 CACNB1Q02641 598 aaPredicted RBP19.54■□□□□ 0.72
MSH6-207ENST00000456246 MCL1Q07820 350 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 MCM6Q14566 821 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 UPP1Q16831 310 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 RTP2Q5QGT7 225 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 ZDHHC14Q8IZN3 488 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 MYCT1Q8N699 235 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 ACSF2Q96CM8 615 aaPredicted RBP19.54■□□□□ 0.72
MSH6-207ENST00000456246 BICD1Q96G01 975 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 CXCL16Q9H2A7 254 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 ZDHHC7Q9NXF8 308 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 CACNG4Q9UBN1 327 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 CDH22Q9UJ99 828 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 FBXO2Q9UK22 296 aaPredicted RBP19.54■□□□□ 0.72
MSH6-207ENST00000456246 DENND4AQ7Z401 1863 aa19.54■□□□□ 0.72
MSH6-207ENST00000456246 TRIP11Q15643 1979 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 NPHP3-ACAD11A0A0J9YXS1 232 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 WEE2P0C1S8 567 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 HARSP12081 509 aaKnown RBP19.53■□□□□ 0.72
MSH6-207ENST00000456246 MARCKSP29966 332 aaPredicted RBP19.53■□□□□ 0.72
MSH6-207ENST00000456246 OSTNP61366 133 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 DHX8Q14562 1220 aaKnown RBP19.53■□□□□ 0.72
MSH6-207ENST00000456246 PSMD5Q16401 504 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 TRIM67Q6ZTA4 783 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 OTOP3Q7RTS5 596 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 CEP57Q86XR8 500 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 HSCBQ8IWL3 235 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 KRI1Q8N9T8 703 aaKnown RBP19.53■□□□□ 0.72
MSH6-207ENST00000456246 STAMQ92783 540 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 B3GALT6Q96L58 329 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 MFSD14AQ96MC6 490 aa19.53■□□□□ 0.72
MSH6-207ENST00000456246 PLEKHA5Q9HAU0 1116 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms