RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 OSCP1Q8WVF1 389 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 AP3S1Q92572 193 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 INO80BQ9C086 356 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 ADA2Q9NZK5 511 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TSPAN9O75954 239 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 JAK1P23458 1154 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ATN1P54259 1190 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 USH1GQ495M9 461 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 HSPH1Q92598 858 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 UBP1Q9NZI7 540 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PBRM1Q86U86 1689 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 RP1L1Q8IWN7 2480 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 ADCY10Q96PN6 1610 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 ALDH1B1P30837 517 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PDIA5Q14554 519 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 LCORLQ8N3X6 602 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 FLAD1Q8NFF5 587 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 HPS1Q92902 700 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PLIN2Q99541 437 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 C20orf96Q9NUD7 363 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 PZPP20742 1482 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 A0A1B0GTH6 734 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 H2AFXP16104 143 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 MAPK11Q15759 364 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 KRT84Q9NSB2 600 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 HPCAL4Q9UM19 191 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TPRKBQ9Y3C4 175 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PCDHB4Q9Y5E5 795 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 NEDD4P46934 1319 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 POTECB2RU33 542 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 VCAM1P19320 739 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PIGHQ14442 188 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 BICRALQ6AI39 1079 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 SMYD5Q6GMV2 418 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 MICU2Q8IYU8 434 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 RIPK1Q13546 671 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 CCDC137Q6PK04 289 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 MUC13Q9H3R2 512 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 RUBCNLQ9H714 662 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 ZBBXA8MT70 800 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 RPLP2P05387 115 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 IL2RBP14784 551 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 DDIT3P35638 169 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 SHQ1Q6PI26 577 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 TRABDQ9H4I3 376 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 SAYSD1Q9NPB0 183 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 WFS1O76024 890 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TTC23LQ6PF05 361 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 B3GNT6Q6ZMB0 384 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 DDX50Q9BQ39 737 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 MAGEE1Q9HCI5 957 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PDXKO00764 312 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TIMM44O43615 452 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 STIP1P31948 543 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 DNAJC3Q13217 504 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TRIP10Q15642 601 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 PTGISQ16647 500 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 SNX19Q92543 992 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 ST7Q9NRC1 585 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TBC1D22BQ9NU19 505 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 USE1Q9NZ43 259 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TTC7AQ9ULT0 858 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 CCDC166P0CW27 439 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 LRRC36Q1X8D7 754 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 METTL23Q86XA0 190 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 XXYLT1Q8NBI6 393 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS53-204ENST00000437048 CROCCQ5TZA2 2017 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 ZNF521Q96K83 1311 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 SNRPAP09012 282 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 ALX1Q15699 326 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 DGUOKQ16854 277 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 RGS21Q2M5E4 152 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 OTUD7BQ6GQQ9 843 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 MAGEB10Q96LZ2 347 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 ZNF184Q99676 751 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 MYH11P35749 1972 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 CNOT3O75175 753 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 NYAP1Q6ZVC0 841 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 HDAC6Q9UBN7 1215 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 ATP10AO60312 1499 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 A0A0A6YYK5 440 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 RTN2O75298 545 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 POLGP54098 1239 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 NFIAQ12857 509 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 C2CD6Q53TS8 623 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 KANSL2Q9H9L4 492 aa7.55□□□□□ -1.2
VPS53-204ENST00000437048 TOPORSQ9NS56 1045 aaPredicted RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 SAP30BPQ9UHR5 308 aaKnown RBP7.55□□□□□ -1.2
VPS53-204ENST00000437048 TAF5LO75529 589 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FAM58BPP0C7Q3 252 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 PTPN12Q05209 780 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 IFNL3Q8IZI9 196 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TAGAPQ8N103 731 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 PNPT1Q8TCS8 783 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 SCFD2Q8WU76 684 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 C17orf50Q8WW18 174 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FAM212AQ96EL1 285 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 EMILIN3Q9NT22 766 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 C15orf41Q9Y2V0 281 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms