RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SEZ6Q53EL9 994 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 KIAA0319Q5VV43 1072 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 RPGRIP1Q96KN7 1286 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 SNX27Q96L92 541 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 PPP1R10Q96QC0 940 aaKnown RBP17.87■□□□□ 0.45
LSM1-201ENST00000311351 TCHPQ9BT92 498 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 PHF7Q9BWX1 381 aaPredicted RBP17.87■□□□□ 0.45
LSM1-201ENST00000311351 ZHX3Q9H4I2 956 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 GOLGA2P5Q9HBQ8 144 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 DZANK1Q9NVP4 752 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 LOC730098B7Z3J9 87 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 PI4K2BG5E9Z4 385 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 MEFVO15553 781 aaPredicted RBP17.86■□□□□ 0.45
LSM1-201ENST00000311351 TBCAO75347 108 aaKnown RBP17.86■□□□□ 0.45
LSM1-201ENST00000311351 TADA2AO75478 443 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 BRD1O95696 1058 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 SP100P23497 879 aaPredicted RBP17.86■□□□□ 0.45
LSM1-201ENST00000311351 NOLC1Q14978 699 aaKnown RBP eCLIP17.86■□□□□ 0.45
LSM1-201ENST00000311351 STK38Q15208 465 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 KIAA1841Q6NSI8 718 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 HAUS6Q7Z4H7 955 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 MYCT1Q8N699 235 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 KRI1Q8N9T8 703 aaKnown RBP17.86■□□□□ 0.45
LSM1-201ENST00000311351 FBXL18Q96ME1 805 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 HAPLN2Q9GZV7 340 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 PARVGQ9HBI0 331 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 CHST7Q9NS84 486 aa17.86■□□□□ 0.45
LSM1-201ENST00000311351 SF3B1O75533 1304 aaKnown RBP eCLIP17.86■□□□□ 0.458e-6■■■■■ 107
LSM1-201ENST00000311351 A0A087X0B3 334 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 TOM1L1O75674 476 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 ADH1AP07327 375 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 MYBP10242 640 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 RPL17P18621 184 aaKnown RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 IGFBP6P24592 240 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 TXLNAP40222 546 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 YARSP54577 528 aaKnown RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 SOX4Q06945 474 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 PKP1Q13835 747 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 USP41Q3LFD5 358 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 FOXD4L6Q3SYB3 417 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 RTP2Q5QGT7 225 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 FOXD4L3Q6VB84 417 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 ZPBP2Q6X784 338 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 DYMQ7RTS9 669 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 PPFIBP1Q86W92 1011 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 GLYCTKQ8IVS8 523 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 LINC00301Q8NCQ3 95 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 RIN2Q8WYP3 895 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 BICD1Q96G01 975 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 ZMAT2Q96NC0 199 aaKnown RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 FIZ1Q96SL8 496 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 C1QTNF1Q9BXJ1 281 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 ADAM7Q9H2U9 754 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 POMKQ9H5K3 350 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 RXFP1Q9HBX9 757 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 C11orf16Q9NQ32 467 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 TOPORSQ9NS56 1045 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 TFIP11Q9UBB9 837 aaKnown RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 STK17AQ9UEE5 414 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 CCDC39Q9UFE4 941 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 MUTYHQ9UIF7 546 aa17.85■□□□□ 0.45
LSM1-201ENST00000311351 MORC2Q9Y6X9 1032 aaPredicted RBP17.85■□□□□ 0.45
LSM1-201ENST00000311351 MTCL1Q9Y4B5 1905 aaKnown RBP17.84■□□□□ 0.45
LSM1-201ENST00000311351 SMIM28A0A1B0GU29 152 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 SPDYE4A6NLX3 237 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 H0YCG3 227 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 DCXO43602 365 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 TRAK2O60296 914 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 NMT1P30419 496 aaKnown RBP17.84■□□□□ 0.45
LSM1-201ENST00000311351 DDIT3P35638 169 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 MATR3P43243 847 aaKnown RBP eCLIP17.84■□□□□ 0.454e-6■■■□□ 17.4
LSM1-201ENST00000311351 CLCNKBP51801 687 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 RRAGBQ5VZM2 374 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 CES5AQ6NT32 575 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 PRSS55Q6UWB4 352 aaPredicted RBP17.84■□□□□ 0.45
LSM1-201ENST00000311351 ALKAL1Q6UXT8 129 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 TMC5Q6UXY8 1006 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 RNF135Q8IUD6 432 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 ACAP3Q96P50 834 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 MAN1C1Q9NR34 630 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 KCNG1Q9UIX4 513 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 SSX2IPQ9Y2D8 614 aa17.84■□□□□ 0.45
LSM1-201ENST00000311351 TRIOO75962 3097 aa17.83■□□□□ 0.45
LSM1-201ENST00000311351 HNRNPDLO14979 420 aaKnown RBP17.83■□□□□ 0.44
LSM1-201ENST00000311351 F13A1P00488 732 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 ZSCAN22P10073 491 aaPredicted RBP17.83■□□□□ 0.44
LSM1-201ENST00000311351 ITIH3Q06033 890 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 MCL1Q07820 350 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 XKR4Q5GH76 650 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 FAM171A1Q5VUB5 890 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 SFR1Q86XK3 245 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 CEP57Q86XR8 500 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 C3orf58Q8NDZ4 430 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 PANK2Q9BZ23 570 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 SFXN1Q9H9B4 322 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 TSHZ2Q9NRE2 1034 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 CNTN3Q9P232 1028 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 TBX20Q9UMR3 447 aa17.83■□□□□ 0.44
LSM1-201ENST00000311351 MYMKA6NI61 221 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 I3L4J1 428 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms