RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C GRH1Q04410 372 aaKnown RBP2.18□□□□□ -2.06
RUB1YDR139C SPO77Q06134 477 aa2.18□□□□□ -2.06
RUB1YDR139C RDS3Q06835 107 aaPredicted RBP2.18□□□□□ -2.06
RUB1YDR139C PLB3Q08108 686 aa2.18□□□□□ -2.06
RUB1YDR139C SME1Q12330 94 aaPredicted RBP2.18□□□□□ -2.06
RUB1YDR139C NOT5Q12514 560 aaPredicted RBP2.18□□□□□ -2.06
RUB1YDR139C DRE2P36152 348 aa2.17□□□□□ -2.06
RUB1YDR139C HEK2P38199 381 aaKnown RBP RIP-Chip data2.17□□□□□ -2.06not detected
RUB1YDR139C RCY1P39531 840 aa2.17□□□□□ -2.06
RUB1YDR139C DDI1P40087 428 aa2.17□□□□□ -2.06
RUB1YDR139C COA1P40452 197 aa2.17□□□□□ -2.06
RUB1YDR139C YJL028WP47062 111 aa2.17□□□□□ -2.06
RUB1YDR139C YOR268CQ08734 132 aa2.17□□□□□ -2.06
RUB1YDR139C VPS68Q12016 184 aa2.17□□□□□ -2.06
RUB1YDR139C TY3A-GQ12173 290 aa2.17□□□□□ -2.06
RUB1YDR139C YPL247CQ12523 523 aa2.17□□□□□ -2.06
RUB1YDR139C TY3A-IQ99219 290 aa2.17□□□□□ -2.06
RUB1YDR139C HIS1P00498 297 aaKnown RBP2.16□□□□□ -2.06
RUB1YDR139C RPL24AP04449 155 aaKnown RBP2.16□□□□□ -2.06
RUB1YDR139C RAD3P06839 778 aa2.16□□□□□ -2.06
RUB1YDR139C RNP1P32385 249 aa2.16□□□□□ -2.06
RUB1YDR139C GDH2P33327 1092 aaKnown RBP2.16□□□□□ -2.06
RUB1YDR139C YHL049CP38722 271 aa2.16□□□□□ -2.06
RUB1YDR139C YHR045WP38775 560 aa2.16□□□□□ -2.06
RUB1YDR139C PET100P38958 111 aa2.16□□□□□ -2.06
RUB1YDR139C PRM9P39551 298 aa2.16□□□□□ -2.06
RUB1YDR139C AAH1P53909 347 aa2.16□□□□□ -2.06
RUB1YDR139C PEX10Q05568 337 aa2.16□□□□□ -2.06
RUB1YDR139C OM45P16547 393 aa2.15□□□□□ -2.07
RUB1YDR139C YGP1P38616 354 aaKnown RBP2.15□□□□□ -2.07
RUB1YDR139C COG3P40094 801 aa2.15□□□□□ -2.07
RUB1YDR139C YJL016WP47072 561 aa2.15□□□□□ -2.07
RUB1YDR139C YMR114CQ04471 368 aaKnown RBP2.15□□□□□ -2.07
RUB1YDR139C SUE1Q06524 206 aa2.15□□□□□ -2.07
RUB1YDR139C YOR283WQ12040 230 aaKnown RBP2.15□□□□□ -2.07
RUB1YDR139C PST1Q12355 444 aa2.15□□□□□ -2.07
RUB1YDR139C PPH21P23594 369 aa2.14□□□□□ -2.07
RUB1YDR139C MAL32P38158 584 aa2.14□□□□□ -2.07
RUB1YDR139C GON7P46984 123 aa2.14□□□□□ -2.07
RUB1YDR139C YJR012CP47087 207 aa2.14□□□□□ -2.07
RUB1YDR139C YJR146WP47174 117 aa2.14□□□□□ -2.07
RUB1YDR139C MAL13P53338 473 aa2.14□□□□□ -2.07
RUB1YDR139C MAL12P53341 584 aa2.14□□□□□ -2.07
RUB1YDR139C OST6Q03723 332 aa2.14□□□□□ -2.07
RUB1YDR139C BOP2Q06150 570 aa2.14□□□□□ -2.07
RUB1YDR139C CWP1P28319 239 aa2.13□□□□□ -2.07
RUB1YDR139C MRPL37P36532 105 aa2.13□□□□□ -2.07
RUB1YDR139C MDM34P53083 459 aa2.13□□□□□ -2.07
RUB1YDR139C SLD7Q08457 257 aa2.13□□□□□ -2.07
RUB1YDR139C GEP5Q12393 293 aa2.13□□□□□ -2.07
RUB1YDR139C COX2P00410 251 aa2.12□□□□□ -2.07
RUB1YDR139C ECM13P38195 257 aa2.12□□□□□ -2.07
RUB1YDR139C RTT105P40063 208 aa2.12□□□□□ -2.07
RUB1YDR139C TIF34P40217 347 aaKnown RBP2.12□□□□□ -2.07
RUB1YDR139C DSN1P40568 576 aa2.12□□□□□ -2.07
RUB1YDR139C ALG11P53954 548 aaKnown RBP2.12□□□□□ -2.07
RUB1YDR139C SLM2P53955 656 aa2.12□□□□□ -2.07
RUB1YDR139C CGI121Q03705 181 aaKnown RBP2.12□□□□□ -2.07
RUB1YDR139C EMI1Q04406 187 aa2.12□□□□□ -2.07
RUB1YDR139C COX20Q04935 205 aa2.12□□□□□ -2.07
RUB1YDR139C MRP1P10662 321 aaKnown RBP2.11□□□□□ -2.07
RUB1YDR139C SCO1P23833 295 aa2.11□□□□□ -2.07
RUB1YDR139C YHL026CP38740 315 aa2.11□□□□□ -2.07
RUB1YDR139C MRPL49P40858 161 aaPredicted RBP2.11□□□□□ -2.07
RUB1YDR139C GPI8P49018 411 aa2.11□□□□□ -2.07
RUB1YDR139C CAB4P53332 305 aa2.11□□□□□ -2.07
RUB1YDR139C ADH6Q04894 360 aaKnown RBP2.11□□□□□ -2.07
RUB1YDR139C YPL119C-AQ3E751 87 aa2.11□□□□□ -2.07
RUB1YDR139C POX1P13711 748 aa2.1□□□□□ -2.07
RUB1YDR139C VPS3P23643 1011 aa2.1□□□□□ -2.07
RUB1YDR139C RPL10P41805 221 aaKnown RBP2.1□□□□□ -2.07
RUB1YDR139C YAR1P46683 200 aa2.1□□□□□ -2.07
RUB1YDR139C COS6P53344 381 aa2.1□□□□□ -2.07
RUB1YDR139C MPP6P53725 186 aaPredicted RBP2.1□□□□□ -2.07
RUB1YDR139C EBS1Q03466 884 aaKnown RBP2.1□□□□□ -2.07
RUB1YDR139C PEX12Q04370 399 aa2.1□□□□□ -2.07
RUB1YDR139C SNF8Q12483 233 aa2.1□□□□□ -2.07
RUB1YDR139C DAL82P21705 255 aa2.09□□□□□ -2.07
RUB1YDR139C QRI5P32344 111 aa2.09□□□□□ -2.07
RUB1YDR139C PRS2P38620 318 aaKnown RBP2.09□□□□□ -2.07
RUB1YDR139C YJL118WP47022 219 aa2.09□□□□□ -2.07
RUB1YDR139C NBP1P52919 319 aaPredicted RBP2.09□□□□□ -2.07
RUB1YDR139C ATG17Q06410 417 aa2.09□□□□□ -2.07
RUB1YDR139C YBL008W-AQ3E821 79 aa2.09□□□□□ -2.07
RUB1YDR139C POL30P15873 258 aaKnown RBP2.08□□□□□ -2.08
RUB1YDR139C RIB7P33312 244 aa2.08□□□□□ -2.08
RUB1YDR139C SSH1P38353 490 aaKnown RBP2.08□□□□□ -2.08
RUB1YDR139C ASI3P53983 676 aa2.08□□□□□ -2.08
RUB1YDR139C EMC6Q12431 108 aa2.08□□□□□ -2.08
RUB1YDR139C SAS5Q99314 248 aa2.08□□□□□ -2.08
RUB1YDR139C DAN1P47178 298 aa2.07□□□□□ -2.08
RUB1YDR139C YPR011CQ12251 326 aa2.07□□□□□ -2.08
RUB1YDR139C SGA1P08019 549 aa2.06□□□□□ -2.08
RUB1YDR139C SEC22P22214 214 aa2.06□□□□□ -2.08
RUB1YDR139C GRE3P38715 327 aaKnown RBP RIP-Chip data2.06□□□□□ -2.08not detected
RUB1YDR139C MEP1P40260 492 aa2.06□□□□□ -2.08
RUB1YDR139C OST2P46964 130 aa2.06□□□□□ -2.08
RUB1YDR139C YDR209CQ03480 137 aa2.06□□□□□ -2.08
RUB1YDR139C YDR124WQ04608 324 aa2.06□□□□□ -2.08
RUB1YDR139C YPR147CQ06522 304 aaKnown RBP2.06□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 52.5 ms