RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	YMR262W	P38430	313 aa		12.33	□□□□□ -0.44
DEP1	YAL013W	SCW4	P53334	386 aa	Known RBP	12.33	□□□□□ -0.44
DEP1	YAL013W	HHT1	P61830	136 aa		12.33	□□□□□ -0.44
DEP1	YAL013W	MRP51	Q02950	344 aa		12.33	□□□□□ -0.44
DEP1	YAL013W	ISA2	Q12425	185 aa		12.33	□□□□□ -0.44
DEP1	YAL013W	CDC39	P25655	2108 aa	Known RBP	12.32	□□□□□ -0.44
DEP1	YAL013W	COX5B	P00425	151 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	CHO1	P08456	276 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	NAM2	P11325	894 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	PET18	P25362	215 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	YIL060W	P40519	144 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	CAT5	P41735	233 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	YGL260W	P53056	76 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	BUD25	P85052	153 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	MRPS16	Q02608	121 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	MCT1	Q12283	360 aa		12.32	□□□□□ -0.44
DEP1	YAL013W	MES1	P00958	751 aa	Known RBP	12.31	□□□□□ -0.44
DEP1	YAL013W	CDC36	P06100	191 aa	Predicted RBP	12.31	□□□□□ -0.44
DEP1	YAL013W	PUP1	P25043	261 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	ATG15	P25641	520 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	DBF20	P32328	564 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	CIN2	P46670	268 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	CTK2	P46962	323 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	PHB2	P50085	310 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	SCY1	P53009	804 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	MTL1	P53214	551 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	YAP6	Q03935	383 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	YLR352W	Q06479	807 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	YPL272C	Q08984	517 aa		12.31	□□□□□ -0.44
DEP1	YAL013W	YHR122W	P38829	231 aa		12.3	□□□□□ -0.44
DEP1	YAL013W	GPI14	P47088	403 aa	Known RBP	12.3	□□□□□ -0.44
DEP1	YAL013W	HSV2	P50079	448 aa	Predicted RBP	12.3	□□□□□ -0.44
DEP1	YAL013W	TNA1	P53322	534 aa		12.3	□□□□□ -0.44
DEP1	YAL013W	RSM23	Q01163	450 aa		12.3	□□□□□ -0.44
DEP1	YAL013W	YPR196W	Q06595	470 aa		12.3	□□□□□ -0.44
DEP1	YAL013W	SGA1	P08019	549 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	SPS2	P08459	502 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	RPL3	P14126	387 aa	Known RBP	12.29	□□□□□ -0.44
DEP1	YAL013W	YBR242W	P38331	238 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	NRK1	P53915	240 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	IZH2	Q12442	317 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	TRA1	P38811	3744 aa		12.29	□□□□□ -0.44
DEP1	YAL013W	PHO2	P07269	559 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	MCM1	P11746	286 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	GCN3	P14741	305 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	ATG22	P25568	528 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	CLG1	P35190	452 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	SOL3	P38858	249 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	CTF19	Q02732	369 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	DIG2	Q03373	323 aa	Known RBP	12.28	□□□□□ -0.44
DEP1	YAL013W	YDL218W	Q07629	317 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	SCM3	Q12334	223 aa		12.28	□□□□□ -0.44
DEP1	YAL013W	HTZ1	Q12692	134 aa	Known RBP	12.28	□□□□□ -0.44
DEP1	YAL013W	NHP6B	P11633	99 aa	Known RBP	12.27	□□□□□ -0.45
DEP1	YAL013W	PPZ2	P33329	710 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	AIM25	P47140	327 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	RNH201	P53942	307 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	MRPL13	Q02204	264 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	UTP15	Q04305	513 aa	Known RBP	12.27	□□□□□ -0.45
DEP1	YAL013W	RAF1	Q06891	181 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	THI72	Q08579	599 aa		12.27	□□□□□ -0.45
DEP1	YAL013W	AFG1	P32317	509 aa		12.26	□□□□□ -0.45
DEP1	YAL013W	PPQ1	P32945	549 aa		12.26	□□□□□ -0.45
DEP1	YAL013W	YGL159W	P53110	370 aa		12.26	□□□□□ -0.45
DEP1	YAL013W	ELA1	P53861	379 aa	Predicted RBP	12.26	□□□□□ -0.45
DEP1	YAL013W	ARO4	P32449	370 aa	Known RBP	12.25	□□□□□ -0.45
DEP1	YAL013W	MRPS5	P33759	307 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	UMP1	P38293	148 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	QDR1	P40475	563 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	XBP1	P40489	647 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	AVT7	P40501	490 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	OTU1	P43558	301 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	BXI1	P48558	297 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	DIE2	P50076	525 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	YGR042W	P53227	271 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	SRP1	Q02821	542 aa	Known RBP	12.25	□□□□□ -0.45
DEP1	YAL013W	YDR391C	Q04170	232 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	TY1A-MR1	Q04215	440 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	ODC2	Q99297	307 aa		12.25	□□□□□ -0.45
DEP1	YAL013W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	12.24	□□□□□ -0.45	not detected
DEP1	YAL013W	HXT2	P23585	541 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	YCP4	P25349	247 aa	Known RBP	12.24	□□□□□ -0.45
DEP1	YAL013W	RNP1	P32385	249 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	12.24	□□□□□ -0.45	not detected
DEP1	YAL013W	MSS1	P32559	526 aa	Predicted RBP	12.24	□□□□□ -0.45
DEP1	YAL013W	FLO10	P36170	1169 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	MRPL3	P36516	390 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	TCM62	P38228	572 aa	Known RBP	12.24	□□□□□ -0.45
DEP1	YAL013W	GPP1	P41277	250 aa	Known RBP	12.24	□□□□□ -0.45
DEP1	YAL013W	UBX6	P47049	396 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	RCE1	Q03530	315 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	YOR385W	Q08909	290 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	SRL2	Q12020	392 aa		12.24	□□□□□ -0.45
DEP1	YAL013W	CDC23	P16522	626 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	MTC7	P32633	139 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	MRT4	P33201	236 aa	Known RBP	12.23	□□□□□ -0.45
DEP1	YAL013W	BOL3	P39724	118 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	YER084W	P40057	128 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	YNR048W	P53740	393 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	RPL6A	Q02326	176 aa	Known RBP	12.23	□□□□□ -0.45

Retrieved 100 of 5,963 RNA–protein pairs in 41.3 ms