RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CDC42BPBQ9Y5S2 1711 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 RGS20O76081 388 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 PIK3C3Q8NEB9 887 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 SLC26A7Q8TE54 656 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 DMAP1Q9NPF5 467 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 MKL2Q9ULH7 1088 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 GSAPA4D1B5 854 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 HSPD1P10809 573 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 TUBA1BP68363 451 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 MESDQ14696 234 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 TUBA1AQ71U36 451 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 RXFP1Q9HBX9 757 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 SLC24A2Q9UI40 661 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 CORO1CQ9ULV4 474 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 FAM95CA0A1B0GW59 222 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 MUTP22033 750 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 ZNF135P52742 658 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 WASHC5Q12768 1159 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 RESTQ13127 1097 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 NAB1Q13506 487 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 NSUN7Q8NE18 718 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 B4E1Z4 1266 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 CAVIN3Q969G5 261 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 MKNK1Q9BUB5 465 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 BDH2Q9BUT1 245 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 DHX36Q9H2U1 1008 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 IRS4O14654 1257 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 PIK3R1P27986 724 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 NME9Q86XW9 330 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 TP53INP1Q96A56 240 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 SLC9A1P19634 815 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CTTNQ14247 550 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 CHST3Q7LGC8 479 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 SLC4A7Q9Y6M7 1214 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ATP7AQ04656 1500 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CD3EAPO15446 510 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 SEMA3DO95025 777 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 HIBADHP31937 336 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 RCOR2Q8IZ40 523 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CCDC33Q8N5R6 958 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ZBTB3Q9H5J0 574 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PARVAQ9NVD7 372 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 WHRNQ9P202 907 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PHF2O75151 1096 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 AP1G2O75843 785 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ECDO95905 644 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 THRAP10827 490 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TJAP1Q5JTD0 557 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TMEM154Q6P9G4 183 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TTC33Q6PID6 262 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 RRM2BQ7LG56 351 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 LINC00523Q86TU6 105 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 P3H2Q8IVL5 708 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PDPRQ8NCN5 879 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ASZ1Q8WWH4 475 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ATXN2LQ8WWM7 1075 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 LRRC59Q96AG4 307 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 IVNS1ABPQ9Y6Y0 642 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 VPS4BO75351 444 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ACAT1P24752 427 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 RNASE9P60153 205 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 TOP3AQ13472 1001 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 CCDC153Q494R4 210 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CCDC157Q569K6 752 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TUBA3EQ6PEY2 450 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 RFX6Q8HWS3 928 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CCDC103Q8IW40 242 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 STAG2Q8N3U4 1231 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 ASAP3Q8TDY4 903 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 SELENONQ9NZV5 590 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 RAD54BQ9Y620 910 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 NDUFB9Q9Y6M9 179 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 MMRN1Q13201 1228 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TBC1D12O60347 775 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 MAPK1P28482 360 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 KIAA1755Q5JYT7 1200 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 CCNI2Q6ZMN8 369 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 PIGOQ8TEQ8 1089 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PABPC3Q9H361 631 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 GUCY1B2O75343 617 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 OGNP20774 298 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 RGS9BPQ6ZS82 235 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PTPROQ16827 1216 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 BARGINQ6ZT62 677 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 B4GALNT2Q8NHY0 566 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PGBD1Q96JS3 809 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 MAP3K14Q99558 947 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 COQ7Q99807 217 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 MAN1B1Q9UKM7 699 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 KLHL20Q9Y2M5 609 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 LOC102724159A0A0B4J2E5 919 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 TNFRSF8P28908 595 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 SFNP31947 248 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 SPRP35270 261 aaPredicted RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 RPS6KA3P51812 740 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 EIF4A2Q14240 407 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 PWP2Q15269 919 aaKnown RBP7.56□□□□□ -1.2
VPS53-204ENST00000437048 ZNF790Q6PG37 636 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 LRRC31Q6UY01 552 aa7.56□□□□□ -1.2
VPS53-204ENST00000437048 PNMA1Q8ND90 353 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms