RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 EIF3DO15371 548 aaKnown RBP eCLIP7.72□□□□□ -1.17
COL28A1-202ENST00000430711 RIPK2O43353 540 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 PHF2O75151 1096 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 LMNB1P20700 586 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 CTNNA2P26232 953 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 MMP13P45452 471 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 KCNJ2P63252 427 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 MRPS9P82933 396 aaKnown RBP7.72□□□□□ -1.17
COL28A1-202ENST00000430711 CEP55Q53EZ4 464 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 HP1BP3Q5SSJ5 553 aaPredicted RBP7.72□□□□□ -1.17
COL28A1-202ENST00000430711 BTNL9Q6UXG8 535 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 EXOC3L1Q86VI1 746 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 SYCP3Q8IZU3 236 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 PPM1KQ8N3J5 372 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 KIF2BQ8N4N8 673 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 TAS1R2Q8TE23 839 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 PSPC1Q8WXF1 523 aaKnown RBP7.72□□□□□ -1.17
COL28A1-202ENST00000430711 CCDC114Q96M63 670 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 NUP85Q9BW27 656 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 TMEM39BQ9GZU3 492 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 CCDC113Q9H0I3 377 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 FZD1Q9UP38 647 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 ZHX2Q9Y6X8 837 aa7.72□□□□□ -1.17
COL28A1-202ENST00000430711 ZNF536O15090 1300 aa7.71□□□□□ -1.17
COL28A1-202ENST00000430711 WDR81Q562E7 1941 aa7.71□□□□□ -1.17
COL28A1-202ENST00000430711 CNTNAP1P78357 1384 aa7.71□□□□□ -1.17
COL28A1-202ENST00000430711 PIK3CDO00329 1044 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 NUDT17P0C025 328 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 VAMP7P51809 220 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 STAT2P52630 851 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 SMTNP53814 917 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 MGAT5Q09328 741 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 BIRC3Q13489 604 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 MTM1Q13496 603 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 ZKSCAN8Q15776 578 aaPredicted RBP7.71□□□□□ -1.18
COL28A1-202ENST00000430711 ZNF568Q3ZCX4 644 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 TMEM63BQ5T3F8 832 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 SWT1Q5T5J6 900 aaKnown RBP7.71□□□□□ -1.18
COL28A1-202ENST00000430711 SPOPLQ6IQ16 392 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 VSTM1Q6UX27 236 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 YTHDF3Q7Z739 585 aaKnown RBP7.71□□□□□ -1.18
COL28A1-202ENST00000430711 CCDC26Q8TAB7 109 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 GDAP1Q8TB36 358 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 NEK9Q8TD19 979 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 DDX1Q92499 740 aaKnown RBP7.71□□□□□ -1.18
COL28A1-202ENST00000430711 CHMP6Q96FZ7 201 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 MS4A3Q96HJ5 214 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 HEMGNQ9BXL5 484 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 CDC42EP4Q9H3Q1 356 aaKnown RBP7.71□□□□□ -1.18
COL28A1-202ENST00000430711 TUFT1Q9NNX1 390 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 FAM114A2Q9NRY5 505 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 KCNH7Q9NS40 1196 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 HSPBP1Q9NZL4 362 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 INTUQ9ULD6 942 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 L3MBTL1Q9Y468 752 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 PTPRJQ12913 1337 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 BPTFQ12830 3046 aa7.71□□□□□ -1.18
COL28A1-202ENST00000430711 CCNE2O96020 404 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 VIL1P09327 827 aaKnown RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 GAP43P17677 238 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 IVDP26440 423 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 NF2P35240 595 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 PEX3P56589 373 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 HTRA3P83110 453 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 ATP13A4Q4VNC1 1196 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 RBM26Q5T8P6 1007 aaKnown RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CC2D2BQ6DHV5 1058 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CCDC121Q6ZUS5 278 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CPLX4Q7Z7G2 160 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 VPS36Q86VN1 386 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 LDHDQ86WU2 507 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 SLC13A5Q86YT5 568 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CACNA2D3Q8IZS8 1091 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 SYCE1Q8N0S2 351 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 HELQQ8TDG4 1101 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 ACSF2Q96CM8 615 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 TBC1D31Q96DN5 1066 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 SCLT1Q96NL6 688 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 FGFR1OP2Q9NVK5 253 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 TBK1Q9UHD2 729 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 FRMD4BQ9Y2L6 1034 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 BRCA2P51587 3418 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 GOLGA6L7A0A1B0GV03 622 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 ARHGEF35A5YM69 484 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 EIF4E1BA6NMX2 242 aaKnown RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 PPIP5K2O43314 1243 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 PEX10O60683 326 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 BANF1O75531 89 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 UBOX5O94941 541 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 COILP38432 576 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 RARRES1P49788 294 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CNGA2Q16280 664 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 IFI16Q16666 785 aaKnown RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 KYNUQ16719 465 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 TNFAIP8L3Q5GJ75 292 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 DENND2CQ68D51 928 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 RUFY4Q6ZNE9 571 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 CPXCR1Q8N123 301 aa7.7□□□□□ -1.18
COL28A1-202ENST00000430711 EIF1ADQ8N9N8 165 aaKnown RBP7.7□□□□□ -1.18
COL28A1-202ENST00000430711 ZNF564Q8TBZ8 553 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms