RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 APOEP02649 317 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 PAEPP09466 180 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 CREB1P16220 341 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 MAGEA4P43358 317 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 C16orf72Q14CZ0 275 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ANKRD20A4Q4UJ75 823 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ODR4Q5SWX8 454 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 CC2D2BQ6DHV5 1058 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 OLFML1Q6UWY5 402 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 CLEC4GQ6UXB4 293 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ATP2A3Q93084 1043 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 PPP2R3CQ969Q6 453 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 PHACTR1Q9C0D0 580 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 IL1RAPL1Q9NZN1 696 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 NDUFA13Q9P0J0 144 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 SERPINB8P50452 374 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 KNOP1Q1ED39 458 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 KHDC1Q4VXA5 237 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ATG16L1Q676U5 607 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 WDR75Q8IWA0 830 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ACAP3Q96P50 834 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 WNT8AQ9H1J5 351 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 APPL1Q9UKG1 709 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 APOBEC2Q9Y235 224 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 KDM6AO15550 1401 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 DDX39AO00148 427 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 TTC4O95801 387 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 STAT2P52630 851 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 TROAPQ12815 778 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 WDR44Q5JSH3 913 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 LRRC8BQ6P9F7 803 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 PRPF39Q86UA1 669 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 NT5DC3Q86UY8 548 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 BAP1Q92560 729 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 BHMT2Q9H2M3 363 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 MANSC1Q9H8J5 431 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 SENP1Q9P0U3 644 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 IQANK1A0A1B0GTG1 560 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 NUDT17P0C025 328 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 PCP11498 1178 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 EEF1B2P24534 225 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 MLH1P40692 756 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 USH1GQ495M9 461 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 RNF43Q68DV7 783 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ASAP3Q8TDY4 903 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 LENG1Q96BZ8 264 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 BTBD6Q96KE9 485 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ZNF317Q96PQ6 595 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ORAI2Q96SN7 254 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 CCT7Q99832 543 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 MTA3Q9BTC8 594 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 PFDN4Q9NQP4 134 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ATP8A2Q9NTI2 1148 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 TMCO1Q9UM00 188 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 USP32Q8NFA0 1604 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 VAV1P15498 845 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 HIBADHP31937 336 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 DCTN2Q13561 401 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ACAP1Q15027 740 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 DNAL1Q4LDG9 190 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 RARS2Q5T160 578 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 LRRC6Q86X45 466 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 PDIK1LQ8N165 341 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ATL2Q8NHH9 583 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 LZICQ8WZA0 190 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 ASCC2Q9H1I8 757 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 SH3GLB2Q9NR46 395 aa9.87□□□□□ -0.83
COL28A1-201ENST00000399429 MTO1Q9Y2Z2 717 aaKnown RBP9.87□□□□□ -0.83
COL28A1-201ENST00000399429 CNTNAP5Q8WYK1 1306 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 DYTNA2CJ06 578 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 GGPS1O95749 300 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 TMEM253P0C7T8 217 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 MCF2P10911 925 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 MYL2P10916 166 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 CBX3Q13185 183 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 PPP2R5DQ14738 602 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 PARP6Q2NL67 630 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 LIN52Q52LA3 116 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 SESTD1Q86VW0 696 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 SLC13A5Q86YT5 568 aaPredicted RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 ARID3BQ8IVW6 561 aaPredicted RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 TLCD1Q96CP7 247 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 DNAJC1Q96KC8 554 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 TTC25Q96NG3 672 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 MRPL1Q9BYD6 325 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 NEU2Q9Y3R4 380 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 ZC3H13Q5T200 1668 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 KIAA0391O15091 583 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 LYNP07948 512 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 KRT10P13645 584 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 PRAMEP78395 509 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 CHRNDQ07001 517 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 CYFIP1Q7L576 1253 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 NAP1L4Q99733 375 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 HAUS8Q9BT25 410 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 UBE2OQ9C0C9 1292 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 GRIP2Q9C0E4 1043 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 WWP1Q9H0M0 922 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 PALMDQ9NP74 551 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 BARHL2Q9NY43 387 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms