RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	GOR1	P53839	350 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	TDA7	P53882	636 aa	Predicted RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	RNY1	Q02933	434 aa	Known RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	DPP1	Q05521	289 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	HNT3	Q08702	217 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	YCR024C-B	Q3E7Z8	88 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	RPS24A	P0CX31	135 aa	Known RBP	4.18	□□□□□ -1.74
ROT1	YMR200W	RPS24B	P0CX32	135 aa	Known RBP	4.18	□□□□□ -1.74
ROT1	YMR200W	AIM17	P23180	465 aa	Known RBP	4.18	□□□□□ -1.74
ROT1	YMR200W	PDC2	P32896	925 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	ECM13	P38195	257 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	WSC4	P38739	605 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	KRE29	P40026	464 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	RSM25	P40496	264 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	YFH7	P43591	353 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	AIM23	P47015	356 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	YGL204C	P53089	101 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	MSO1	P53604	210 aa	Known RBP	4.18	□□□□□ -1.74
ROT1	YMR200W	FYV6	P53913	173 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	NRK1	P53915	240 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	YMR166C	Q03829	368 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	RIF2	Q06208	395 aa		4.18	□□□□□ -1.74
ROT1	YMR200W	SWR1	Q05471	1514 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	PHO80	P20052	293 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	RPL16A	P26784	199 aa	Known RBP	4.17	□□□□□ -1.74
ROT1	YMR200W	SGE1	P33335	543 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	YKL075C	P36083	450 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	AVT5	P38176	459 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	VMA22	P38784	181 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	NQM1	P53228	333 aa	Predicted RBP	4.17	□□□□□ -1.74
ROT1	YMR200W	TRM82	Q03774	444 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	YML096W	Q04489	525 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	TAF9	Q05027	157 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	GRX8	Q05926	109 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	PEX30	Q06169	523 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	DXO1	Q06349	442 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	NOC4	Q06512	552 aa	Predicted RBP	4.17	□□□□□ -1.74
ROT1	YMR200W	SNX3	Q08826	162 aa	Known RBP	4.17	□□□□□ -1.74
ROT1	YMR200W	MMT2	Q08970	484 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	SLM3	Q12093	417 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	YDR018C	Q12185	396 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	EMP46	Q12396	444 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	PCL9	Q12477	304 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	NOT5	Q12514	560 aa	Predicted RBP	4.17	□□□□□ -1.74
ROT1	YMR200W	ECM5	Q03214	1411 aa		4.17	□□□□□ -1.74
ROT1	YMR200W	SPT3	P06844	337 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	DPM1	P14020	267 aa	Known RBP	4.16	□□□□□ -1.74
ROT1	YMR200W	AGA1	P32323	725 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	KTI12	P34253	313 aa	Known RBP	4.16	□□□□□ -1.74
ROT1	YMR200W	MRPL3	P36516	390 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	YHR127W	P38833	243 aa	Known RBP	4.16	□□□□□ -1.74
ROT1	YMR200W	RRT5	P43607	289 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	YJR056C	P47115	236 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	OST3	P48439	350 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	TPN1	P53099	579 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	YMR181C	Q03231	154 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	YMR010W	Q03687	405 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	GMC1	Q04399	608 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	INM2	Q05533	292 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	YLR446W	Q06204	433 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	RSA1	Q08932	381 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	FRE8	Q12209	686 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	TPO4	Q12256	659 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	DNA2	P38859	1522 aa		4.16	□□□□□ -1.74
ROT1	YMR200W	IFM1	P25038	676 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	PHA2	P32452	334 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	ALK2	P32789	676 aa	Predicted RBP	4.15	□□□□□ -1.75
ROT1	YMR200W	YBP1	P38315	674 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	RRP3	P38712	501 aa	Known RBP	4.15	□□□□□ -1.75
ROT1	YMR200W	GOS1	P38736	223 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	COX14	P39103	70 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	YNR066C	P53752	436 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	SWS2	P53937	143 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	ABF2	Q02486	183 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	YET2	Q04210	160 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	MRX9	Q07349	420 aa	Known RBP	4.15	□□□□□ -1.75
ROT1	YMR200W	NSL1	Q12143	216 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	USB1	Q12208	290 aa	Known RBP	4.15	□□□□□ -1.75
ROT1	YMR200W	PRM4	Q12498	284 aa		4.15	□□□□□ -1.75
ROT1	YMR200W	TY1B-DR4	Q07793	1604 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	PIS1	P06197	220 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	YOL163W	P0CF20	169 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	RPL23A	P0CX41	137 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	RPL23B	P0CX42	137 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	CUP2	P15315	225 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	DBF2	P22204	572 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	SIP2	P34164	415 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	ARC40	P38328	384 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	CYC2	P38909	366 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	SER33	P40510	469 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	MRPL49	P40858	161 aa	Predicted RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	MDV1	P47025	714 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	YGL039W	P53183	348 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	PDR17	P53844	350 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	NUP49	Q02199	472 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	PIR3	Q03180	325 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	YDR248C	Q03786	193 aa		4.14	□□□□□ -1.75
ROT1	YMR200W	DTD1	Q07648	150 aa	Known RBP	4.14	□□□□□ -1.75
ROT1	YMR200W	YLR053C	Q12026	108 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms