RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	MBA1	P38300	278 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	MTC6	P38849	526 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	PTI1	P39927	425 aa	Predicted RBP	9.46	□□□□□ -0.9
VPS60	YDR486C	TIR3	P40552	269 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	SER2	P42941	309 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	LUC7	Q07508	261 aa	Predicted RBP	9.46	□□□□□ -0.9
VPS60	YDR486C	YPL272C	Q08984	517 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	YDL180W	Q12301	547 aa		9.46	□□□□□ -0.9
VPS60	YDR486C	IPP1	P00817	287 aa	Known RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	SCEI	P03882	235 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	PHO2	P07269	559 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	RPS16A	P0CX51	143 aa	Known RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	RPS16B	P0CX52	143 aa	Known RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	PCL1	P24867	279 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	SED4	P25365	1065 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	SFK1	P35735	353 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	IPI1	P38803	334 aa	Predicted RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	MIT1	P40002	666 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	IMD3	P50095	523 aa	Known RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	RSM28	Q03430	361 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	ASR1	Q06834	288 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	RTC5	Q12108	567 aa	Known RBP	9.45	□□□□□ -0.9
VPS60	YDR486C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	9.45	□□□□□ -0.9	not detected
VPS60	YDR486C	RRI1	Q12468	440 aa		9.45	□□□□□ -0.9
VPS60	YDR486C	SEC16	P48415	2195 aa	Known RBP	9.44	□□□□□ -0.9
VPS60	YDR486C	HOM6	P31116	359 aa	Known RBP	9.44	□□□□□ -0.9
VPS60	YDR486C	ERG24	P32462	438 aa	Known RBP	9.44	□□□□□ -0.9
VPS60	YDR486C	RTT105	P40063	208 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	MRPL19	P53875	158 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	SAM50	P53969	484 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	YLR152C	P54072	576 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	RCN2	Q12044	265 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	ATG41	Q12048	136 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	RTN2	Q12443	393 aa		9.44	□□□□□ -0.9
VPS60	YDR486C	PHO4	P07270	312 aa	Known RBP	9.43	□□□□□ -0.9
VPS60	YDR486C	CUP1-1	P0CX80	61 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	CUP1-2	P0CX81	61 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	ITR1	P30605	584 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	FRM2	P37261	193 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	AAD14	P42884	376 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	YIP4	P53093	235 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	MTM1	P53320	366 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	ERV29	P53337	310 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	YNL165W	P53891	406 aa		9.43	□□□□□ -0.9
VPS60	YDR486C	SPT14	P32363	452 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	MKS1	P34072	584 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	YMR262W	P38430	313 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	PUG1	P40100	303 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	LOH1	P47055	219 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	IRC18	P47056	224 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	ELA1	P53861	379 aa	Predicted RBP	9.42	□□□□□ -0.9
VPS60	YDR486C	YAP6	Q03935	383 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	RAF1	Q06891	181 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	MCT1	Q12283	360 aa		9.42	□□□□□ -0.9
VPS60	YDR486C	PRB1	P09232	635 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	MSS4	P38994	779 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	DLS1	P40366	167 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	XBP1	P40489	647 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	NIT3	P49954	291 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	YDR387C	Q04162	555 aa		9.41	□□□□□ -0.9
VPS60	YDR486C	RGC1	Q06108	1083 aa	Known RBP	9.41	□□□□□ -0.9
VPS60	YDR486C	PRS5	Q12265	496 aa	Known RBP	9.41	□□□□□ -0.9
VPS60	YDR486C	COX5B	P00425	151 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	MATALPHA1	P0CY06	175 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	HMLALPHA1	P0CY07	175 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	PRE4	P30657	266 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	PPG1	P32838	368 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	SSH1	P38353	490 aa	Known RBP	9.4	□□□□□ -0.9
VPS60	YDR486C	BNA6	P43619	295 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	YJL055W	P47044	245 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	SCY1	P53009	804 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	AAH1	P53909	347 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	TPO3	Q06451	622 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	HEM25	Q07534	307 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	YOR283W	Q12040	230 aa	Known RBP	9.4	□□□□□ -0.9
VPS60	YDR486C	ORT1	Q12375	292 aa		9.4	□□□□□ -0.9
VPS60	YDR486C	FOL3	Q12676	427 aa	Predicted RBP	9.4	□□□□□ -0.9
VPS60	YDR486C	PRP8	P33334	2413 aa	Known RBP	9.4	□□□□□ -0.91
VPS60	YDR486C	MES1	P00958	751 aa	Known RBP	9.39	□□□□□ -0.91
VPS60	YDR486C	ATG15	P25641	520 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	CNE1	P27825	502 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	RCN1	P36054	211 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	TAT1	P38085	619 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	HTD2	P38790	280 aa	Known RBP	9.39	□□□□□ -0.91
VPS60	YDR486C	GPI16	P38875	610 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	GPP1	P41277	250 aa	Known RBP	9.39	□□□□□ -0.91
VPS60	YDR486C	TNA1	P53322	534 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	PXR1	P53335	271 aa	Predicted RBP	9.39	□□□□□ -0.91
VPS60	YDR486C	PEX10	Q05568	337 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	PEX30	Q06169	523 aa		9.39	□□□□□ -0.91
VPS60	YDR486C	CDC36	P06100	191 aa	Predicted RBP	9.38	□□□□□ -0.91
VPS60	YDR486C	HEM4	P06174	275 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	SGA1	P08019	549 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	NAM2	P11325	894 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	CAP2	P13517	287 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	PDA1	P16387	420 aa	Known RBP	9.38	□□□□□ -0.91
VPS60	YDR486C	MRPS5	P33759	307 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	YBR096W	P38256	230 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	IDP2	P41939	412 aa		9.38	□□□□□ -0.91
VPS60	YDR486C	ERJ5	P43613	295 aa	Predicted RBP	9.38	□□□□□ -0.91

Retrieved 100 of 5,963 RNA–protein pairs in 6.6 ms