RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	BUD17	P53727	317 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	NUP100	Q02629	959 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	RUB1	Q03919	77 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	YDR109C	Q04585	715 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	TRM10	Q12400	293 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	Q0144	Q9ZZW2	109 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	YPS1	P32329	569 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	SGE1	P33335	543 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	DOA1	P36037	715 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	ATG12	P38316	186 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	NVJ1	P38881	321 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	ALP1	P38971	573 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	MIT1	P40002	666 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	TAX4	P47030	604 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	MOG1	P47123	218 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	YGL101W	P53144	215 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	AIM36	Q03798	255 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	HPT1	Q04178	221 aa	Known RBP	4.14	□□□□□ -1.75
CDC48	YDL126C	TMA10	Q06177	86 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	MFG1	Q07684	458 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	YLR012C	Q07927	99 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	NUS1	Q12063	375 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	RKI1	Q12189	258 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	YLR046C	Q12253	270 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	RHO2	P06781	192 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	REV1	P12689	985 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	MTF1	P14908	341 aa	Known RBP	4.14	□□□□□ -1.75
CDC48	YDL126C	PRE1	P22141	198 aa	Known RBP	4.14	□□□□□ -1.75
CDC48	YDL126C	FUN26	P31381	517 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	ECT1	P33412	323 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	PTC1	P35182	281 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	YPT31	P38555	223 aa	Known RBP	4.14	□□□□□ -1.75
CDC48	YDL126C	BUD13	P46947	266 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC48	YDL126C	SPT20	P50875	604 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	MRH4	P53166	561 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	POS5	Q06892	414 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	YPQ1	Q12010	308 aa		4.14	□□□□□ -1.75
CDC48	YDL126C	GPH1	P06738	902 aa	Known RBP	4.13	□□□□□ -1.75
CDC48	YDL126C	ZRC1	P20107	442 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	DAL82	P21705	255 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	CSM1	P25651	190 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	UBC8	P28263	218 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	SCM4	P32564	187 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	TCA17	P32613	152 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	MNS1	P32906	549 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YKL162C	P36052	402 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	GMH1	P36125	273 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	HAT2	P39984	401 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YDL186W	P48568	277 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	PHO23	P50947	330 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	UFD1	P53044	361 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YGR151C	P53287	111 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	BSP1	Q06604	576 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	IPK1	Q06667	281 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	USV1	Q12132	391 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YOR114W	Q12219	294 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	SAS5	Q99314	248 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	RIP1	P08067	215 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	SPS2	P08459	502 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	SIP2	P34164	415 aa	Known RBP	4.13	□□□□□ -1.75
CDC48	YDL126C	ASK1	P35734	292 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	POG1	P40473	351 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YJL043W	P47053	257 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	IRC18	P47056	224 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	JHD2	P47156	728 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC48	YDL126C	TOS2	P50078	622 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	AIF1	P52923	378 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YIP4	P53093	235 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	TPN1	P53099	579 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	PKP2	P53170	491 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	SHY1	P53266	389 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	DIG2	Q03373	323 aa	Known RBP	4.13	□□□□□ -1.75
CDC48	YDL126C	GPN3	Q06543	272 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	YOR387C	Q08910	206 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	ATP14	Q12349	124 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	RMD5	Q12508	421 aa		4.13	□□□□□ -1.75
CDC48	YDL126C	MES1	P00958	751 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	GDH1	P07262	454 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	ATP5	P09457	212 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	SAR1	P20606	190 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	NUP2	P32499	720 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	SKT5	P34226	696 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	SNU114	P36048	1008 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	LDB7	P38210	180 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	AME1	P38313	324 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	UBA4	P38820	440 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	NSG1	P38837	291 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	YIL024C	P40543	189 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	RPL10	P41805	221 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	CWC23	P52868	283 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	YIP3	P53633	176 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	SPP2	Q02521	185 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	ERG4	P25340	473 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	ADH7	P25377	361 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	YCR090C	P25654	182 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	RNP1	P32385	249 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	RPF2	P36160	344 aa	Known RBP	4.12	□□□□□ -1.75
CDC48	YDL126C	YBR137W	P38276	179 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	PFS1	P38872	237 aa		4.12	□□□□□ -1.75
CDC48	YDL126C	DHH1	P39517	506 aa	Known RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms