RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-209	ENST00000578329	TMEM175	Q9BSA9	504 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KIFC3	Q9BVG8	833 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HERC2P3	Q9BVR0	1158 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MRPL9	Q9BYD2	267 aa	Known RBP	4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NFKBIZ	Q9BYH8	718 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	C22orf23	Q9BZE7	217 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HAPLN2	Q9GZV7	340 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KCNH6	Q9H252	994 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PDZD7	Q9H5P4	517 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZSWIM4	Q9H7M6	989 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PTPRH	Q9HD43	1115 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ANKEF1	Q9NU02	776 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DLGAP2	Q9P1A6	1054 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FAM50B	Q9Y247	325 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PRG3	Q9Y2Y8	225 aa	Predicted RBP	4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FANCM	Q8IYD8	2048 aa		4.96	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PROB1	E7EW31	1015 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ANHX	E9PGG2	379 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329		H0Y858	1186 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	C2CD2L	O14523	706 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TGM5	O43548	720 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TBC1D4	O60343	1298 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	USO1	O60763	962 aa	Known RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LRRN2	O75325	713 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NPTXR	O95502	500 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CDC25A	P30304	524 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HOXC13	P31276	330 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KRT2	P35908	639 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TXK	P42681	527 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RAB27A	P51159	221 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NEK4	P51957	841 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KRT17	Q04695	432 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ITIH3	Q06033	890 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FZD5	Q13467	585 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZNF174	Q15697	407 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FAM187B	Q17R55	369 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	XKR4	Q5GH76	650 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	WDR44	Q5JSH3	913 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ALKAL1	Q6UXT8	129 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MAEA	Q7L5Y9	396 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ABI1	Q8IZP0	508 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZNF687	Q8N1G0	1237 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CMAS	Q8NFW8	434 aa	Predicted RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FBXO18	Q8NFZ0	1043 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LNX1	Q8TBB1	728 aa	Predicted RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLC7A3	Q8WY07	619 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TMEM169	Q96HH4	297 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PNMA5	Q96PV4	448 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PPP1R10	Q96QC0	940 aa	Known RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MTR	Q99707	1265 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RUSC1	Q9BVN2	902 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RHOBTB2	Q9BYZ6	727 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NT5C3A	Q9H0P0	336 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KCNK12	Q9HB15	430 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MAN1C1	Q9NR34	630 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PUF60	Q9UHX1	559 aa	Known RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DBR1	Q9UK59	544 aa	Known RBP	4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PCDHA12	Q9UN75	941 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SORCS3	Q9UPU3	1222 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	UST	Q9Y2C2	406 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PPME1	Q9Y570	386 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PCDHB6	Q9Y5E3	794 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NCOR2	Q9Y618	2525 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CNTNAP2	Q9UHC6	1331 aa		4.95	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PDCD11	Q14690	1871 aa	Known RBP	4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MYH15	Q9Y2K3	1946 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CCDC195	A0A1B0GUA6	201 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329		I3L4J1	428 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	INO80B-WBP1	J3KQ70	363 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ASAP2	O43150	1006 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GALR2	O43603	387 aa	Predicted RBP	4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FAM189A1	O60320	539 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NEMF	O60524	1076 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MOSPD3	O75425	235 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DGAT1	O75907	488 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RECQL4	O94761	1208 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	XRCC6	P12956	609 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ITGA4	P13612	1032 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CYP11B2	P19099	503 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PROZ	P22891	400 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	U2AF2	P26368	475 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RPA1	P27694	616 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MCM7	P33993	719 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MTHFR	P42898	656 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DNM2	P50570	870 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CDC42EP1	Q00587	391 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GRIN1	Q05586	938 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HTR4	Q13639	388 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CALCRL	Q16602	461 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLC5A9	Q2M3M2	681 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FUT10	Q6P4F1	479 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PADI6	Q6TGC4	694 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	C15orf39	Q6ZRI6	1047 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PALB2	Q86YC2	1186 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NOSTRIN	Q8IVI9	506 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CCDC83	Q8IWF9	413 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLFN12	Q8IYM2	578 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLC44A3	Q8N4M1	653 aa		4.94	□□□□□ -1.62
PPP4R1-209	ENST00000578329	IGSF22	Q8N9C0	903 aa		4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms