RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GAD1Q99259 594 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 NELL2Q99435 816 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 KXD1Q9BQD3 176 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 JPH2Q9BR39 696 aaPredicted RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 PHF20Q9BVI0 1012 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 APOL6Q9BWW8 343 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 ZMYND12Q9H0C1 365 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 IFT122Q9HBG6 1241 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 PARD6AQ9NPB6 346 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 UBN1Q9NPG3 1134 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 BRPF3Q9ULD4 1205 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 MRPS17Q9Y2R5 130 aaKnown RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 COL4A3BPQ9Y5P4 624 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 NOTCH4Q99466 2003 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 CEP295Q9C0D2 2601 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 ESYT2A0FGR8 921 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 ARL5CA6NH57 179 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SLC30A4O14863 429 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 ERLIN2O94905 339 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 PAPLNO95428 1278 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 C1RP00736 705 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 TARSP26639 723 aaKnown RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 HOXA11P31270 313 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 MLH1P40692 756 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SCNN1GP51170 649 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CREMQ03060 361 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 DSC1Q08554 894 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 DMWDQ09019 674 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 PPM1LQ5SGD2 360 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 UBXN11Q5T124 520 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CREB3L3Q68CJ9 461 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 PLA2G4FQ68DD2 849 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 PRSS55Q6UWB4 352 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 ZNF852Q6ZMS4 543 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 PRR23BQ6ZRT6 265 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SRGAP1Q7Z6B7 1085 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SMG8Q8ND04 991 aaKnown RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 RDM1Q8NG50 284 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 BICD2Q8TD16 824 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SLC7A3Q8WY07 619 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 SLC5A5Q92911 643 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CLDN23Q96B33 292 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 LENG9Q96B70 501 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CEP89Q96ST8 783 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 FAM126AQ9BYI3 521 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 GPR62Q9BZJ7 368 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 MINDY3Q9H8M7 445 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CHST7Q9NS84 486 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 FAM217BQ9NTX9 383 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 FNIP2Q9P278 1114 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 RALYQ9UKM9 306 aaKnown RBP8.19□□□□□ -1.1
VPS4A-203ENST00000564399 IPPQ9Y573 584 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 CFAP47Q6ZTR5 3102 aa8.19□□□□□ -1.1
VPS4A-203ENST00000564399 ZFYVE26Q68DK2 2539 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 KLF18A0A0U1RQI7 1052 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 CCL16O15467 120 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 XYLBO75191 536 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 TADA2AO75478 443 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 STBD1O95210 358 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 EFEMP2O95967 443 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 C8AP07357 584 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 HNRNPA1P09651 372 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 CDC27P30260 824 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 ADD1P35611 737 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 RPS9P46781 194 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 NRLP54845 237 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 NPEPPSP55786 919 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 FGD1P98174 961 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 AKAP17AQ02040 695 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 ADCY1Q08828 1119 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 NCBP1Q09161 790 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 MTAPQ13126 283 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 PPP2R5DQ14738 602 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 LAIR1Q6GTX8 287 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 CEP57Q86XR8 500 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 GPR65Q8IYL9 337 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 ITFG1Q8TB96 612 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 PRPF31Q8WWY3 499 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 PSPC1Q8WXF1 523 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 RABGGTAQ92696 567 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 NELL1Q92832 810 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 TMEM143Q96AN5 459 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 ZFP42Q96MM3 310 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 EIF2AQ9BY44 585 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 TRIM6Q9C030 488 aaPredicted RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 LSG1Q9H089 658 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 PRMT8Q9NR22 394 aaPredicted RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 BMP2KQ9NSY1 1161 aaPredicted RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 MIOSQ9NXC5 875 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 FBXW11Q9UKB1 542 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 ADAM28Q9UKQ2 775 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 NDRG2Q9UN36 371 aaKnown RBP8.18□□□□□ -1.1
VPS4A-203ENST00000564399 HES2Q9Y543 173 aa8.18□□□□□ -1.1
VPS4A-203ENST00000564399 CCDC196A0A1B0GTZ2 297 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 PSMD10O75832 226 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 RETP07949 1114 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 USP11P51784 963 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 PSMC5P62195 406 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms