RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 EIF3DO15371 548 aaKnown RBP eCLIP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 TOM1L1O75674 476 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 DGKIO75912 1065 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 RHOBTB3O94955 611 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 MYBP10242 640 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 ATF7P17544 494 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 PROZP22891 400 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 PNOCQ13519 176 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 DCAF4L1Q3SXM0 396 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 L1TD1Q5T7N2 865 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 EEF1DP3Q658K8 133 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 TMEM92Q6UXU6 159 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 EPM2AIP1Q7L775 607 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 TMCO2Q7Z6W1 182 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 CDR2LQ86X02 465 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 SPATA20Q8TB22 786 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 ZNF507Q8TCN5 953 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 HPS3Q969F9 1004 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 PGBD4Q96DM1 585 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 GSDMAQ96QA5 445 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 ACCSQ96QU6 501 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 RAD9AQ99638 391 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 ZBED2Q9BTP6 218 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 EIF2AQ9BY44 585 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 TRIM6Q9C030 488 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 PLSCR2Q9NRY7 297 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 INSL6Q9Y581 213 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 PLXNA4Q9HCM2 1894 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 LAMA3Q16787 3333 aa13.05□□□□□ -0.32
PDLIM5-208ENST00000504489 ABLIM1O14639 778 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 HOXA2O43364 376 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 TLL1O43897 1013 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 PRPF6O94906 941 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 SMC2O95347 1197 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 NPTXRO95502 500 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 LIG4P49917 911 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 RABGGTBP53611 331 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 RAB30Q15771 203 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 FAM117BQ6P1L5 589 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 MPZL3Q6UWV2 235 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 HACE1Q8IYU2 909 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 SMG8Q8ND04 991 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 GLIS3Q8NEA6 775 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 RSPH1Q8WYR4 309 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 MARVELD3Q96A59 401 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 ZNF689Q96CS4 500 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 BICD1Q96G01 975 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 TMEM206Q9H813 350 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 RC3H2Q9HBD1 1191 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 SLC39A2Q9NP94 309 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 RNF19AQ9NV58 838 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 EXOC7Q9UPT5 735 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 IPPQ9Y573 584 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 PCDHA5Q9Y5H7 936 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 UBE4BO95155 1302 aa13.04□□□□□ -0.32
PDLIM5-208ENST00000504489 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 HNRNPDLO14979 420 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 CLDN3O15551 220 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 MCF2P10911 925 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 ITGA4P13612 1032 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 MCM4P33991 863 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 HOXD13P35453 343 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 MCL1Q07820 350 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 KCNA1Q09470 495 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 STK4Q13043 487 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 BMT2Q1RMZ1 405 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 ZNF568Q3ZCX4 644 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 HABP4Q5JVS0 413 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 SLFN12LQ6IEE8 588 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 AGMOQ6ZNB7 445 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 KIAA0895Q8NCT3 520 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 SCFD1Q8WVM8 642 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 SMARCE1Q969G3 411 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 ZBTB45Q96K62 511 aaPredicted RBP13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 YME1L1Q96TA2 773 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 TCHPQ9BT92 498 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 PBX4Q9BYU1 374 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 TMEM117Q9H0C3 514 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 CDT1Q9H211 546 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 NXF3Q9H4D5 531 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 UBN1Q9NPG3 1134 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 RMND1Q9NWS8 449 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 MSRAQ9UJ68 235 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 STYXL1Q9Y6J8 313 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 ZMYM2Q9UBW7 1377 aa13.03□□□□□ -0.32
PDLIM5-208ENST00000504489 MEIS3P2A8K0S8 358 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 ANKRD63C9JTQ0 380 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 HOXB3P14651 431 aaPredicted RBP13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 IBSPP21815 317 aaPredicted RBP13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 DNAJB2P25686 324 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 PBX2P40425 430 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 NOLC1Q14978 699 aaKnown RBP eCLIP13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 CLLU1OSQ5K130 101 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 SLC39A4Q6P5W5 647 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 CMTR2Q8IYT2 770 aaKnown RBP13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 SYCP3Q8IZU3 236 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 RNF169Q8NCN4 708 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 GPT2Q8TD30 523 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 LPPQ93052 612 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 GTPBP4Q9BZE4 634 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms