RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 JAKMIP1Q96N16 626 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 YIPF2Q9BWQ6 316 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 GSX1Q9H4S2 264 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF576Q9H609 170 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 HDAC6Q9UBN7 1215 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 SEPT3Q9UH03 358 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 MSRAQ9UJ68 235 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 BRPF3Q9ULD4 1205 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 NAP1L2Q9ULW6 460 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 SLC4A7Q9Y6M7 1214 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 CCDC196A0A1B0GTZ2 297 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 GRXCR1A8MXD5 290 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 H3BRB1 525 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 EREGO14944 169 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PDGFAP04085 211 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 LGALS2P05162 132 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 FOSL2P15408 326 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 ATP2A2P16615 1042 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PSMA5P28066 241 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 METAP2P50579 478 aaKnown RBP eCLIP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 ADCY7P51828 1080 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 NAPAP54920 295 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 CYP27A1Q02318 531 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 RBL2Q08999 1139 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 MTMR1Q13613 665 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PLCL1Q15111 1095 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 WWC2Q6AWC2 1192 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 LRRC8DQ7L1W4 858 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 CYFIP1Q7L576 1253 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 ATG4DQ86TL0 474 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 MYLIPQ8WY64 445 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 DHX38Q92620 1227 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 GPRASP2Q96D09 838 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 VWCEQ96DN2 955 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 CTAGE1Q96RT6 745 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 GPR20Q99678 358 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 SENP7Q9BQF6 1050 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 C16orf70Q9BSU1 422 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 FTOQ9C0B1 505 aaKnown RBP eCLIP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 GLT8D2Q9H1C3 349 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 TUT1Q9H6E5 874 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 ZNF215Q9UL58 517 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PCDHA6Q9UN73 950 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PCDHA8Q9Y5H6 950 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 SNX14Q9Y5W7 946 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 MICAL3Q7RTP6 2002 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 PTPRSQ13332 1948 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 UNC80Q8N2C7 3258 aa7.77□□□□□ -1.17
CCDC88A-213ENST00000476903 NID2Q14112 1375 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 C17orf102A2RUQ5 167 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 STXBP3O00186 592 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BIN1O00499 593 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 EPB41L2O43491 1005 aaKnown RBP7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BAIAP3O94812 1187 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 SMIM10L2AP0DMW4 78 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 SMIM10L2BP0DMW5 78 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 CKBP12277 381 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 CPA1P15085 419 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 RPS6KB1P23443 525 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 APOBRQ0VD83 1088 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BNIP3Q12983 259 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 MAP7Q14244 749 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 PEAR1Q5VY43 1037 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 Q6ZUG5 572 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 FBXL16Q8N461 479 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 MAFAQ8NHW3 353 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 CLP1Q92989 425 aaKnown RBP7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BRF1Q92994 677 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 SLC9A7Q96T83 725 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BCAS3Q9H6U6 928 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 SLC28A3Q9HAS3 691 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 RIC8AQ9NPQ8 531 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 JADE2Q9NQC1 790 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 FAM105AQ9NUU6 356 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 BARHL2Q9NY43 387 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 PCDHA11Q9Y5I1 949 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 MYH9P35579 1960 aaKnown RBP7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 A0A0C4DFX4 3053 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 CHD7Q9P2D1 2997 aa7.76□□□□□ -1.17
CCDC88A-213ENST00000476903 SMCO2A6NFE2 343 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 MAFGO15525 162 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 FOSP01100 380 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 GNAT1P11488 350 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 KCNA2P16389 499 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 HOXC8P31273 242 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 KCNJ6P48051 423 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 RABGGTBP53611 331 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 ZNF200P98182 395 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 SP4Q02446 784 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 GSTM4Q03013 218 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 AP3B2Q13367 1082 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 PFKFB3Q16875 520 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 TRIM71Q2Q1W2 868 aaKnown RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 UTP14CQ5TAP6 766 aaKnown RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 LCE5AQ5TCM9 118 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 TMEM164Q5U3C3 297 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 CNKSR3Q6P9H4 555 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 OGFOD3Q6PK18 319 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 SERINC5Q86VE9 423 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 PHOSPHO2Q8TCD6 241 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms