RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	ERD1	P16151	362 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	NTF2	P33331	125 aa	Known RBP	4.23	□□□□□ -1.73
ROT1	YMR200W	NUF2	P33895	451 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	MCH2	P36032	473 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	JEN1	P36035	616 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	CAF4	P36130	643 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	LEU5	P38702	357 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	VPS52	P39904	641 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	CFD1	P40558	293 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	NUP57	P48837	541 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	UBC13	P52490	153 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	YGL235W	P53071	178 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	YDC1	Q02896	317 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	PRM6	Q04705	352 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	TAZ1	Q06510	381 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	YPR147C	Q06522	304 aa	Known RBP	4.23	□□□□□ -1.73
ROT1	YMR200W	YDL114W	Q07530	308 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	ESA1	Q08649	445 aa		4.23	□□□□□ -1.73
ROT1	YMR200W	RDL2	Q08742	149 aa	Known RBP	4.23	□□□□□ -1.73
ROT1	YMR200W	RRS1	Q08746	203 aa	Known RBP	4.23	□□□□□ -1.73
ROT1	YMR200W	SAL1	D6W196	494 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	REP1	P03871	373 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ASP3-2	P0CX77	362 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ASP3-3	P0CX78	362 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ASP3-4	P0CX79	362 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ASP3-1	P0CZ17	362 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
ROT1	YMR200W	HMT1	P38074	348 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ATG12	P38316	186 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	FLO5	P38894	1075 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	SHC1	P39000	512 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	CTK3	P46963	296 aa	Predicted RBP	4.22	□□□□□ -1.73
ROT1	YMR200W	VPS25	P47142	202 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	MMS2	P53152	137 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	RPL15B	P54780	204 aa	Predicted RBP	4.22	□□□□□ -1.73
ROT1	YMR200W	VPS60	Q03390	229 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	BCH1	Q05029	724 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	ECI1	Q05871	280 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	YPL199C	Q08954	240 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	RPN6	Q12377	434 aa		4.22	□□□□□ -1.73
ROT1	YMR200W	SAM2	P19358	384 aa	Known RBP	4.21	□□□□□ -1.74
ROT1	YMR200W	INO2	P26798	304 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	SPS18	P32572	300 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	ANR2	P36090	516 aa	Predicted RBP	4.21	□□□□□ -1.74
ROT1	YMR200W	DER1	P38307	211 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
ROT1	YMR200W	GWT1	P47026	490 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YJL016W	P47072	561 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	SBH2	P52871	88 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YPS5	P53057	165 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YGL082W	P53155	381 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	POP6	P53218	158 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	VHT1	P53241	593 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	COS1	P53822	381 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YLR152C	P54072	576 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	RHO3	Q00245	231 aa	Known RBP	4.21	□□□□□ -1.74
ROT1	YMR200W	TRM44	Q02648	567 aa	Known RBP	4.21	□□□□□ -1.74
ROT1	YMR200W	YMR027W	Q04371	470 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YPR098C	Q06089	161 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	MFG1	Q07684	458 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	TFC7	Q12415	435 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	YPL119C-A	Q3E751	87 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	STH1	P32597	1359 aa		4.21	□□□□□ -1.74
ROT1	YMR200W	TPI1	P00942	248 aa	Known RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	RPS3	P05750	240 aa	Known RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	CBS2	P14905	389 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	CTA1	P15202	515 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	CPT1	P17898	393 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	PPH21	P23594	369 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	GLC7	P32598	312 aa	Known RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	SPC34	P36131	295 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YCR087C-A	P37263	153 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YBR096W	P38256	230 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	MTC6	P38849	526 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	MST28	P39552	234 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	COG3	P40094	801 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	RTS2	P40962	232 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	PRM10	P42946	383 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	TRM9	P49957	279 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	AVT4	P50944	713 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	NSA1	P53136	463 aa	Predicted RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	YGR042W	P53227	271 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	ARK1	P53974	638 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YEH2	Q07950	538 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YNG1	Q08465	219 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	TAF10	Q12030	206 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YLR112W	Q12130	139 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	BSC1	Q12140	328 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	YLR126C	Q12288	251 aa		4.2	□□□□□ -1.74
ROT1	YMR200W	LSO2	Q3E772	92 aa	Known RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	TCB3	Q03640	1545 aa	Known RBP	4.2	□□□□□ -1.74
ROT1	YMR200W	BCY1	P07278	416 aa	Known RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	RPS28B	P0C0X0	67 aa	Known RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	GLN3	P18494	730 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	ISY1	P21374	235 aa	Predicted RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	PMT2	P31382	759 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	TPS2	P31688	896 aa	Known RBP	4.19	□□□□□ -1.74
ROT1	YMR200W	YAP3	P38749	330 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	IRC18	P47056	224 aa		4.19	□□□□□ -1.74
ROT1	YMR200W	BRR6	P53062	197 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 25.4 ms