RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	MPM1	P40364	252 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	SEC24	P40482	926 aa	Known RBP	4.1	□□□□□ -1.75
UBI4	YLL039C	SMK1	P41808	388 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	SHR5	P41912	237 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	IRC6	P43615	237 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	BPL1	P48445	690 aa	Predicted RBP	4.1	□□□□□ -1.75
UBI4	YLL039C	POP6	P53218	158 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	CPR8	P53728	308 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	MNT4	P53745	580 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	YNL181W	P53878	407 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	MTQ1	P53944	314 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	MEH1	Q02205	184 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	NCE101	Q02820	53 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	FDC1	Q03034	503 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	SNZ1	Q03148	297 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	INP1	Q03694	420 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	ARR2	Q06597	130 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	CYK3	Q07533	885 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	SKI7	Q08491	747 aa	Predicted RBP	4.1	□□□□□ -1.75
UBI4	YLL039C	TMS1	Q12116	473 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	SFM1	Q12314	213 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	PRP46	Q12417	451 aa	Predicted RBP	4.1	□□□□□ -1.75
UBI4	YLL039C	RTN2	Q12443	393 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	YOR032W-A	Q8TGS1	66 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	YOS9	Q99220	542 aa		4.1	□□□□□ -1.75
UBI4	YLL039C	YBR085C-A	O43137	85 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	TIM9	O74700	87 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	ARF1	P11076	181 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	RPL3	P14126	387 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	RPA135	P22138	1203 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	YCK1	P23291	538 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	GRR1	P24814	1151 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	RER1	P25560	188 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	EMP70	P32802	667 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
UBI4	YLL039C	CIN1	P40987	1014 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	SNM1	P40993	198 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	IDP2	P41939	412 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	VPS73	P53142	486 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	DBP6	P53734	629 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	ATG21	Q02887	496 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	RRN5	Q02983	363 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	YDR541C	Q03049	344 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	YMR099C	Q03161	297 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	CTL1	Q03220	320 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	PRM15	Q03262	622 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	YDR209C	Q03480	137 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	PAL1	Q05518	499 aa	Known RBP	4.09	□□□□□ -1.75
UBI4	YLL039C	YLR352W	Q06479	807 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	YPL199C	Q08954	240 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	AEP3	Q12089	606 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	SFG1	Q12507	346 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	HBN1	Q96VH4	193 aa		4.09	□□□□□ -1.75
UBI4	YLL039C	RPL25	P04456	142 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	RPL7A	P05737	244 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	ADE5,7	P07244	802 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	STE12	P13574	688 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	ADH7	P25377	361 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	CWH43	P25618	953 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	HSP150	P32478	413 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	MIA40	P36046	403 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	SNU114	P36048	1008 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	PEX32	P38292	413 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	ISC1	P40015	477 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	RTT105	P40063	208 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	YMR144W	P40214	342 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	YKE4	P40544	346 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	MET28	P40573	187 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	BLM10	P43583	2143 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	AIM24	P47127	394 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	NUP57	P48837	541 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	YGL260W	P53056	76 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	MPC1	P53157	130 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	DAM1	P53267	343 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	HOL1	P53389	586 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	DLT1	Q04216	342 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	RNH202	Q05635	350 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	DCR2	Q05924	578 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	SEI1	Q06058	285 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	GAS2	Q06135	555 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	YLR446W	Q06204	433 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	YDL211C	Q12121	372 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	MDM32	Q12171	622 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	RPL7B	Q12213	244 aa	Known RBP	4.08	□□□□□ -1.76
UBI4	YLL039C	MRX4	Q12467	430 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	YPL119C-A	Q3E751	87 aa		4.08	□□□□□ -1.76
UBI4	YLL039C	CDC39	P25655	2108 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	CDC9	P04819	755 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	ERD1	P16151	362 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	PET9	P18239	318 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	SED4	P25365	1065 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
UBI4	YLL039C	LDS1	P31379	325 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	GSH1	P32477	678 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	NDC1	P32500	655 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	YPT7	P32939	208 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	MTC2	P34246	357 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	POP7	P38291	140 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	ERV15	P38312	142 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	ECM34	P38728	170 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms