RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ECM18	Q04623	453 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	RRG8	Q06109	277 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	YPR091C	Q06833	770 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	FCY22	Q12119	530 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	ERV2	Q12284	196 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	YPR1	Q12458	312 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	IRA2	P19158	3079 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	STE2	D6VTK4	431 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	RAD3	P06839	778 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	URA10	P30402	227 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	MKK1	P32490	508 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	RAD23	P32628	398 aa	Known RBP	4.07	□□□□□ -1.76
CAF16	YFL028C	SPO23	P33757	523 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	RPC37	P36121	282 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	YHR218W	P38899	603 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	FET3	P38993	636 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	SEO1	P39709	593 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	SMX2	P40204	77 aa	Known RBP	4.07	□□□□□ -1.76
CAF16	YFL028C	UTP25	P40498	721 aa	Known RBP	4.07	□□□□□ -1.76
CAF16	YFL028C	LOC1	P43586	204 aa	Predicted RBP	4.07	□□□□□ -1.76
CAF16	YFL028C	GLG2	P47011	380 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	NUP84	P52891	726 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	SPO19	Q03029	223 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	RVB1	Q03940	463 aa	Known RBP	4.07	□□□□□ -1.76
CAF16	YFL028C	RIF2	Q06208	395 aa		4.07	□□□□□ -1.76
CAF16	YFL028C	MSB2	P32334	1306 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	MSI1	P13712	422 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
CAF16	YFL028C	RPL16A	P26784	199 aa	Known RBP	4.06	□□□□□ -1.76
CAF16	YFL028C	IMP3	P32899	183 aa	Predicted RBP	4.06	□□□□□ -1.76
CAF16	YFL028C	CSE1	P33307	960 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	MRP21	P38175	177 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	TIM17	P39515	158 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	TAF6	P53040	516 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	YGL185C	P53100	379 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	COG7	P53195	279 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	SLT2	Q00772	484 aa		4.06	□□□□□ -1.76
CAF16	YFL028C	HRI1	Q05905	244 aa	Known RBP	4.06	□□□□□ -1.76
CAF16	YFL028C	SEN1	Q00416	2231 aa	Known RBP	4.06	□□□□□ -1.76
CAF16	YFL028C	SPT15	P13393	240 aa	Known RBP	4.05	□□□□□ -1.76
CAF16	YFL028C	NAM9	P27929	486 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	AVT5	P38176	459 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	LDB7	P38210	180 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	WSC4	P38739	605 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	YHI9	P38765	294 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	YCH1	P42937	148 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	MST27	P53176	234 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	PXR1	P53335	271 aa	Predicted RBP	4.05	□□□□□ -1.76
CAF16	YFL028C	PET117	Q02771	107 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	UBA3	Q99344	299 aa		4.05	□□□□□ -1.76
CAF16	YFL028C	ACC1	Q00955	2233 aa	Known RBP	4.05	□□□□□ -1.76
CAF16	YFL028C	GPA2	P10823	449 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	NSP1	P14907	823 aa	Known RBP	4.04	□□□□□ -1.76
CAF16	YFL028C	MSS116	P15424	664 aa	Known RBP	4.04	□□□□□ -1.76
CAF16	YFL028C	FUN26	P31381	517 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	YKL162C	P36052	402 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	ETR1	P38071	380 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	TAE1	P38340	232 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	BAT1	P38891	393 aa	Known RBP	4.04	□□□□□ -1.76
CAF16	YFL028C	EGT2	P42835	1041 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	CIN2	P46670	268 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	LOH1	P47055	219 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	COQ5	P49017	307 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	SWC4	P53201	476 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	REX2	P54964	269 aa	Known RBP	4.04	□□□□□ -1.76
CAF16	YFL028C	CDC123	Q05791	360 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	YET3	Q07451	203 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	YDL114W	Q07530	308 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	SAM4	Q08985	325 aa	Known RBP	4.04	□□□□□ -1.76
CAF16	YFL028C	YDL199C	Q12407	687 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	NAG1	Q8TGN9	163 aa		4.04	□□□□□ -1.76
CAF16	YFL028C	MRPL25	P23369	157 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	SEC14	P24280	304 aa	Known RBP	4.03	□□□□□ -1.76
CAF16	YFL028C	CHA1	P25379	360 aa	Known RBP	4.03	□□□□□ -1.76
CAF16	YFL028C	YCR099C	P25657	155 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	CPR3	P25719	182 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	ERG9	P29704	444 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	SPS19	P32573	292 aa	Known RBP	4.03	□□□□□ -1.76
CAF16	YFL028C	CYM1	P32898	989 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	SRX1	P36077	127 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	YKL070W	P36087	169 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	MAK5	P38112	773 aa	Predicted RBP	4.03	□□□□□ -1.76
CAF16	YFL028C	YMR262W	P38430	313 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	PEX18	P38855	283 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	DFG10	P40526	253 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	YFR057W	P43625	151 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	GTO1	P48239	356 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	NBP35	P52920	328 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	RPN14	P53196	417 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	BIO4	P53630	237 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	SFH1	Q06168	426 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	MFG1	Q07684	458 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	ATG10	Q07879	167 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	YDL109C	Q12103	647 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	IZH2	Q12442	317 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	YMR030W-A	Q3E760	96 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	YKL068W-A	Q3E826	78 aa		4.03	□□□□□ -1.76
CAF16	YFL028C	POL2	P21951	2222 aa	Known RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	EPT1	P22140	391 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	ARO2	P28777	376 aa	Known RBP	4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 170 ms